View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4417_low_4 (Length: 690)

Name: NF4417_low_4
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4417_low_4
NF4417_low_4
[»] chr6 (10 HSPs)
chr6 (1-488)||(20590784-20591270)
chr6 (1-488)||(20621660-20622148)
chr6 (40-488)||(12053110-12053558)
chr6 (3-487)||(12057170-12057644)
chr6 (225-488)||(20632308-20632569)
chr6 (601-678)||(12056952-12057029)
chr6 (601-678)||(20632711-20632788)
chr6 (601-678)||(12052893-12052970)
chr6 (601-678)||(20591457-20591534)
chr6 (612-678)||(20622298-20622364)
[»] chr2 (1 HSPs)
chr2 (83-195)||(11257041-11257154)
[»] chr4 (2 HSPs)
chr4 (134-180)||(31938965-31939011)
chr4 (140-196)||(2944126-2944182)
[»] chr5 (2 HSPs)
chr5 (129-188)||(35403070-35403129)
chr5 (66-110)||(27299693-27299736)
[»] chr8 (2 HSPs)
chr8 (134-188)||(5788445-5788499)
chr8 (120-193)||(42939274-42939346)


Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 20590784 - 20591270
Alignment:
Q  1 cctttcatcattgctatgcaattattcatacccatttcacattcctctttctcttattctcatgctaaccggtgtcccggaagcattagttaaggaagcc 100  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||  ||||| |||||| ||| |    
T  20590784 cctttcatcattgttctgcaattattcatacccgtttcacattcctctttctcttattctcatgctaaccggtgccccgggggcattggttaagaaagtc 20590883  T
Q  101 aaaaagaaaattttgagtcaaaattgaaacttgttaaacttttaatgtattgaatacataacttttaatacaaaatactattatatttaattcttttaac 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| | ||||||| |||    
T  20590884 aaaaaggaaattttgagtcaaaattgaaacttgttaaacttttaatgtattgaatacacaactgttaatacaaaatactactatatatgattctttcaac 20590983  T
Q  201 tagtgttcgagaacgttggttagcatttcccattctcttattgcaaacaactgaggtataggtgttctcgttttcttcttcctttgtttttcttataagt 300  Q
     | ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||    
T  20590984 cactgtccgagaacgctggttagcatttcccattctcttattgaaaacaactgaggtacaagtgttctcttttccttcttcctttgtttttcttataagt 20591083  T
Q  301 ataaaaatggagttgtcgcgtcctaaccaaagttcattaaaatagggaaaacattgaaaaacccctttnnnnnnnnnnnnntggcccttaaagctaaatt 400  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||             |||||||||||||||||||    
T  20591084 ataaaaatggagttgttgcgtcctaaccaaagttcattaaaacagggaaaacatcgaaaaaccccttt-aaaaagaaaaaatggcccttaaagctaaatt 20591182  T
Q  401 ttagattcataagctgtttatgcttagagaagaatttagcactctacaacatttgttaaaaatggttatctctaattaattgtgcaag 488  Q
    |||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  20591183 ttagattcataagctgtttatgctcagagaaggatttagcaccctacaacatttgttaaaaatgattatctctaattaattgtgcaag 20591270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 20621660 - 20622148
Alignment:
Q  1 cctttcatcattgctatgcaattattcatacccatttcacattcctctttctcttattctcatgctaaccggtgtcccggaagcattagttaaggaagcc 100  Q
    ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||  ||||  ||||| ||||||||||||    
T  20621660 cctttcatcattgttctgcaattattcatacccgtttcacattcctctttctcttattctcatgctagccggtgctccgggggcattggttaaggaagcc 20621759  T
Q  101 aaaaagaaaattttgagtcaaaattgaaacttgttaaacttttaatgtattgaatacataacttttaatacaaaatactattatatttaattcttttaac 200  Q
    |||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||| |||||||    
T  20621760 aaaaaagaaattttgagtcaaaattgaaactttttaaacttttaatgtattgaatacacaacttttaatataaaatactactatatttgattattttaac 20621859  T
Q  201 tagtgttcgagaacgttggttagcatttcccattctcttattgcaaacaactgaggtataggtgttctcgttttcttcttcctttgtttttcttataagt 300  Q
      |||| |||||||  |||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||    
T  20621860 cggtgtccgagaacactggttagcatttcccattctcttattgc-aacaactgaggtacatgtgttctcttttccttcttcctttgtttttcttataagt 20621958  T
Q  301 ataaaaatggagttgtcgcgtcctaaccaaagttcattaaaatagggaaaacattg---aaaaacccctttnnnnnnnnnnnnntggcccttaaagctaa 397  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |   ||||| ||||||             ||||||||||||||||    
T  20621959 ataaaaatggagttgtcgcgtcgtaaccgaagttcattaaaatagggaaaacatcgaaaaaaaaacccttt-aaaaagaaaaattggcccttaaagctaa 20622057  T
Q  398 attttagattcataagctgtttatgcttagagaagaatttagcactctacaacatttgttaaaaatggttatctctaattaattgtgcaag 488  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20622058 attttagattcataagctgtttatgcttagagaaggatttagcaccctacaacatttgttaaaaatggttatctctaattaattgtgcaag 20622148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 40 - 488
Target Start/End: Complemental strand, 12053558 - 12053110
Alignment:
Q  40 cattcctctttctcttattctcatgctaaccggtgtcccggaagcattagttaaggaagccaaaaagaaaattttgagtcaaaattgaaacttgttaaac 139  Q
    |||||||||||||||||||||||||||| |||||| ||||   ||||| ||||||||||||| |||| |||||||||||||||||| |||||| ||||||    
T  12053558 cattcctctttctcttattctcatgctagccggtgccccgagggcattggttaaggaagccagaaaggaaattttgagtcaaaattaaaactttttaaac 12053459  T
Q  140 ttttaatgtattgaatacataacttttaatacaaaatactattatatttaattcttttaactagtgttcgagaacgttggttagcatttcccattctctt 239  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||||| ||| ||||||| ||||| | |||||| |||||||||||||||||||||||    
T  12053458 ttttaatgtattgaatacacaacttttaagacaaaatactactatatttgattattttaaccagtgtccaagaacgatggttagcatttcccattctctt 12053359  T
Q  240 attgcaaacaactgaggtataggtgttctcgttttcttcttcctttgtttttcttataagtataaaaatggagttgtcgcgtcctaaccaaagttcatta 339  Q
    ||||| ||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12053358 attgc-aacaactaaggtacaggtgttctcttttccttcttcctttgtttttcttataagtataaaaatggagttgtcgcgtcctaaccgaagttcatta 12053260  T
Q  340 aaatagggaaaacattgaaaaacccctttnnnnnnnnnnnnntggccctt-aaagctaaattttagattcataagctgtttatgcttagagaagaattta 438  Q
    ||||||||||||||| |||||||||||||             |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12053259 aaatagggaaaacatcgaaaaacccctttaaaaagaaaaaaatggcccttaaaagctaaattttagattcataagctgtttatgcttagagaaggattta 12053160  T
Q  439 gcactctacaacatttgttaaaaatggttatctctaattaattgtgcaag 488  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  12053159 gcaccctacaacatttgttaaaactggttatctctaattaattgtgcaag 12053110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 3 - 487
Target Start/End: Complemental strand, 12057644 - 12057170
Alignment:
Q  3 tttcatcattgctatgcaattattcatacccatttcacattcctctttctcttattctcatgctaaccggtgtcccggaagcattagttaaggaagccaa 102  Q
    ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||  | ||| || ||  ||||| ||||| ||||||||    
T  12057644 tttcatcattgttttgcaattattcatacccgtttcacattcctctttctcttattctcatgctagtctgtgcccaggg-gcattggttaaagaagccaa 12057546  T
Q  103 aaagaaaattttgagtcaaaattgaaacttgttaaacttttaatgtattgaatacataacttttaatacaaaatactattatatttaattcttttaacta 202  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || ||||||| ||||||||||| |    
T  12057545 aaaggaaattttgagtcaaaattgaaactttttaaacttttaatgtattgaatacacaacttttaatacaaaatattactatatttgattcttttaacca 12057446  T
Q  203 gtgttcgagaacgttggttagcatttcccattctcttattgcaaacaactgaggtataggtgttctcgttttcttcttcctttgtttttcttataagtat 302  Q
    || | |||||| | | ||||||||||   ||||||||||||| ||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||||    
T  12057445 gtatccgagaatgctagttagcattt---attctcttattgc-aacaactgaggtacatgtgttctcttttccttcttcctttgtttttcttataagtat 12057350  T
Q  303 aaaaatggagttgtcgcgtcctaaccaaagttcattaaaatagggaaaacattgaaaaacccctttnnnnnnnnnnnnntggccctt-aaagctaaattt 401  Q
    |||||||||||||| | ||     || ||||||||||||||||||||||||| |||||||||||||              ||||||| ||||||||||||    
T  12057349 aaaaatggagttgttgtgt-----ccgaagttcattaaaatagggaaaacatcgaaaaacccctttaaaaagaaaaaaa-ggcccttaaaagctaaattt 12057256  T
Q  402 tagattcataagctgtttatgcttagagaagaatttagcactctacaacatttgttaaaaatggttatctctaattaattgtgcaa 487  Q
    |||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12057255 tagattcataagttgtttatgcttagagaaggatttagcaccctacaacatttgttaaaaatggttatctctaattaattgtgcaa 12057170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 225 - 488
Target Start/End: Original strand, 20632308 - 20632569
Alignment:
Q  225 atttcccattctcttattgcaaacaactgaggtataggtgttctcgttttcttcttcctttgtttttcttataagtataaaaatggagttgtcgcgtcct 324  Q
    |||||||||||||||||||||| ||||||||||| || ||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20632308 atttcccattctcttattgcaa-caactgaggtacagttgttctcttttccatcttccttt-tttttcttataagtataaaaatggagttgtcgcgtcct 20632405  T
Q  325 aaccaaagttcattaaaatagggaaaacattgaaaaacccctttnnnnnnnnnnnnntggccctt-aaagctaaattttagattcataagctgtttatgc 423  Q
    |||| |||||||||||||||||||||| || |||||||||||||             |||||||| ||||||||||||||||||||||||||||||||||    
T  20632406 aaccgaagttcattaaaatagggaaaaaatcgaaaaaccccttt-aaaaagaaaaaatggcccttaaaagctaaattttagattcataagctgtttatgc 20632504  T
Q  424 ttagagaagaatttagcactctacaacatttgttaaaaatggttatctctaattaattgtgcaag 488  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20632505 ttagagaaggatttagcaccctacaacatttgttaaaaatggttatctctaattaattgtgcaag 20632569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 601 - 678
Target Start/End: Complemental strand, 12057029 - 12056952
Alignment:
Q  601 cattattgtgattgacaaaagtggtttcnnnnnnncatttgtcaaaaataaaagtggtttctttctcttacgtgtctc 678  Q
    |||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  12057029 cattattgtgcttgacaaaagtggtttctctttttcatttgtcaaaaataaaagtggtttctttctcttacgtgtctc 12056952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 601 - 678
Target Start/End: Original strand, 20632711 - 20632788
Alignment:
Q  601 cattattgtgattgacaaaagtggtttcnnnnnnncatttgtcaaaaataaaagtggtttctttctcttacgtgtctc 678  Q
    |||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  20632711 cattattgtgcttgacaaaagtggtttctcattttcatttgtcaaaaataaaagtggtttctttctcttacgtgtctc 20632788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 601 - 678
Target Start/End: Complemental strand, 12052970 - 12052893
Alignment:
Q  601 cattattgtgattgacaaaagtggtttcnnnnnnncatttgtcaaaaataaaagtggtttctttctcttacgtgtctc 678  Q
    |||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||    
T  12052970 cattattgtgcttgacaaaagtggtttctcattttcatttgtcaaaaataaaagtggtttctttcttttacgtgtctc 12052893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 601 - 678
Target Start/End: Original strand, 20591457 - 20591534
Alignment:
Q  601 cattattgtgattgacaaaagtggtttcnnnnnnncatttgtcaaaaataaaagtggtttctttctcttacgtgtctc 678  Q
    ||||||| || ||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  20591457 cattattatgcttgacaaaattggtttctttttttcatttgtcaaaaataaaagtggtttctttctcttacgtgtctc 20591534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 678
Target Start/End: Original strand, 20622298 - 20622364
Alignment:
Q  612 ttgacaaaagtggtttcnnnnnnncatttgtcaaaaataaaagtggtttctttctcttacgtgtctc 678  Q
    |||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||    
T  20622298 ttgacaaaagtggtttctctttttcatttgtcaaaaataaaactggtttctttctcttacgtgtctc 20622364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 11257154 - 11257041
Alignment:
Q  83 gcattagttaaggaagccaaaaa-gaaaattttgagtcaaaattgaaacttgttaaacttttaatgtattgaatacataacttttaatacaaaatactat 181  Q
    ||||| ||||||||||| ||||  ||||||||| |||||||| | | |||| |||| ||||||||| | |||   ||||||||| |||||||||||||||    
T  11257154 gcattggttaaggaagctaaaagtgaaaattttaagtcaaaagtaacactttttaagcttttaatgcaatgacatcataactttcaatacaaaatactat 11257055  T
Q  182 tatatttaattctt 195  Q
    ||||||||| ||||    
T  11257054 tatatttaactctt 11257041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 31938965 - 31939011
Alignment:
Q  134 ttaaacttttaatgtattgaatacataacttttaatacaaaatacta 180  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||    
T  31938965 ttaaacttttaatgtattgattacacaacttttaatgcaaaatacta 31939011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 2944126 - 2944182
Alignment:
Q  140 ttttaatgtattgaatacataacttttaatacaaaatactattatatttaattcttt 196  Q
    |||||||| ||||| |||||||||||  || |||||||||| ||||||||| |||||    
T  2944126 ttttaatgcattgactacataactttccatgcaaaatactactatatttaactcttt 2944182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 35403129 - 35403070
Alignment:
Q  129 acttgttaaacttttaatgtattgaatacataacttttaatacaaaatactattatattt 188  Q
    |||| |||||||||||||||| |||  ||| |||||| |||||||||||||| |||||||    
T  35403129 actttttaaacttttaatgtaatgacaacacaactttcaatacaaaatactactatattt 35403070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 27299693 - 27299736
Alignment:
Q  66 taaccggtgtcccggaagcattagttaaggaagccaaaaagaaaa 110  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||    
T  27299693 taaccggtgtcccgga-gcattagttaaggaatccaaaaaaaaaa 27299736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 5788499 - 5788445
Alignment:
Q  134 ttaaacttttaatgtattgaatacataacttttaatacaaaatactattatattt 188  Q
    ||||| |||||||| |||||||||| ||||||||||| |||||| || |||||||    
T  5788499 ttaaatttttaatgcattgaatacacaacttttaatataaaatattactatattt 5788445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 42939346 - 42939274
Alignment:
Q  120 aaaattgaaacttgttaaacttttaatgtattgaatacataacttttaatacaaaatactattatatttaattc 193  Q
    |||| ||| |||| |||||||||||||| ||||| |||| |||||||||| | ||||||||  |||||||||||    
T  42939346 aaaaatgatactttttaaacttttaatgcattgactacacaacttttaatgc-aaatactaccatatttaattc 42939274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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