View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4417_low_6 (Length: 432)
Name: NF4417_low_6
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4417_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 5621019 - 5621449
Alignment:
| Q |
1 |
ttcaattctctactcttatggactttccaccatgttcagtgctattcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataacttgt |
100 |
Q |
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| T |
5621019 |
ttcaattctctactcttatggactttccaccatgttcagtgctattcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataacttgt |
5621118 |
T |
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| Q |
101 |
ctttaagtatctactatggaatctttttcaatttttcgtcagnnnnnnnngtccgatgacattacactggccattgataaccagataccacatgtagaac |
200 |
Q |
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| T |
5621119 |
ctttaagtatctactatggaatctttttcaatttttcgtcagttttttttgtccgatgacattatactggccattgataaccagataccacatgtagaac |
5621218 |
T |
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| Q |
201 |
tatattattggttttactttcctctttattaaaatggtgtaaaga-tgatccaaattcatctccatcaactttatatttcaaaatttagcgaacttaagt |
299 |
Q |
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| T |
5621219 |
tatattattggttttacttacctctttattaaaatggtgtaaagaatgatccaaattcatctccatcaactttatatttcaaaatttagcgaacttaagt |
5621318 |
T |
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| Q |
300 |
cacttgtaccagctgatcaatggaggtgttgtttatataaatctggtgttttaagctggttcagttttcatacataaatttatatcttttaacagggatg |
399 |
Q |
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| T |
5621319 |
cacttgtaccagctgatcaatggaggtgttgtttatataaatctggtgttttaagctggttcag--ttcatacataaatttatatcttttaacagggatg |
5621416 |
T |
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| Q |
400 |
agggagtccgctggggaatacagaatggccttt |
432 |
Q |
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| T |
5621417 |
agggagtccactggggaatacagaatggccttt |
5621449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30635728 - 30635631
Alignment:
| Q |
1 |
ttcaattctctactcttatggactttccaccatgttcagtgctattcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataactt |
98 |
Q |
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| T |
30635728 |
ttcaattctatactcttatggactttccaccatgttcagtgctattcctgctttttctaaaaaaggagatataattgtggcgtaagtatgcataactt |
30635631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 30635428 - 30635361
Alignment:
| Q |
365 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggccttt |
432 |
Q |
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| T |
30635428 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggccttt |
30635361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 21424529 - 21424432
Alignment:
| Q |
1 |
ttcaattctctactcttatggactttccaccatgttcagtgctattcctgctttctctaaaaaaggcgatataattgtagcgtaagtatgcataactt |
98 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
21424529 |
ttcaattctatactcttatggactttccaccatgttcagtgctattcctgctttttctaaaaaaggagatataattgtggcgtaagtatgcataactt |
21424432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 21424229 - 21424162
Alignment:
| Q |
365 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggccttt |
432 |
Q |
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| T |
21424229 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggccttt |
21424162 |
T |
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