View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418-Insertion-5 (Length: 515)
Name: NF4418-Insertion-5
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 8 - 515
Target Start/End: Complemental strand, 11179760 - 11179252
Alignment:
| Q |
8 |
gttcgatcccttcttttcagacgttggttacattacaaggaacctttatatattcaattatggcgtcgtcaacattcttgacatttctacacttctcaag |
107 |
Q |
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| T |
11179760 |
gttcgatcccttcttttcagacgttggttacattaaaaggaacctttatatattcaattatggcgtcgtcaacattcttgacatttctacacttctcaag |
11179661 |
T |
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| Q |
108 |
aataagcttgcaaaaataatctgaccaagcctatttaatttgaagatttgctatgagtatgggtgttctatatgttttgctatttcttttttaaacaagt |
207 |
Q |
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| T |
11179660 |
aataagcttgcaaaaataatctgaccaagcctatttaatttgaagatttgctatgagtatgggtgttctatatgttttgctatttcttttttaaacaagt |
11179561 |
T |
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| Q |
208 |
ttctcgctccattcttgacaatataaaagaatttcatgcagacattcaatcatatttaacatataaatactcgtataagtattttagaaaataacattat |
307 |
Q |
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| T |
11179560 |
ttctcgctccattcttgacaatataaaagaatttcatgcagacattcaatcatatttaacatataaatacttgaataagtattttagaaaataacattat |
11179461 |
T |
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| Q |
308 |
gacataacacattaaaaaac-tttgacacaattattattagggagcttctgcggtccctaatcaacttgaagaagaaaacaaaaacatagtatataacta |
406 |
Q |
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| T |
11179460 |
gacataacacattaaaaaacttttgacacaaatattattagggagcttctacggtccccaatcaacttgaagaacaaaacaaaaacatagtatagaacta |
11179361 |
T |
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| Q |
407 |
gaaagagcatacaaacagagattaattatcgtgatccaccacatacacacatcatatatgtatgcagaaaatattgaacctcttcgatattttccaagcg |
506 |
Q |
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| T |
11179360 |
gaaagagcatacaagcagagattaattatcgtgatccaccacatacacacatcatatatgtatgcagaaaatattgaacctcttcgatattttccaagcg |
11179261 |
T |
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| Q |
507 |
tatgtttag |
515 |
Q |
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| T |
11179260 |
tatgtttag |
11179252 |
T |
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