View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419-Insertion-1 (Length: 1015)
Name: NF4419-Insertion-1
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 894; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 894; E-Value: 0
Query Start/End: Original strand, 16 - 991
Target Start/End: Complemental strand, 52098885 - 52097907
Alignment:
| Q |
16 |
tatagaattgaattcaacaggaagaatagaccgcgaccggtagatattgactggagggttgaatatttggataaataacatccacaaggttcataacaca |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52098885 |
tatagaattgaattcaacaggaagaatagaccgcgaccggtaaatattgactggaaggttgaatatttggataaataacatccacagggttcataacaca |
52098786 |
T |
|
| Q |
116 |
aagtacattaattttgagtcttcatattctttctcttaaaatcctaatacaaatttgaaacattagagctaccattccatggaagagagttttcagaatc |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
52098785 |
aagtacattaattttgagtcttcatattctttctcttaatatcctaatacaaatttgaaacattagagctaccattccatggaagaaagtgttcagaatc |
52098686 |
T |
|
| Q |
216 |
tgtttagatatttgccagatgaaattctaggctgcatagtatcttttctaccaaatgaatatgcacttgaaaccagcctcatatctaccaggtggagaga |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52098685 |
tgtttagatatttgccagatgaaattctaggctgcatagtatcttttctaccaaatgaatatgcacttgaaaccagcctcatatctaccaggtggagaga |
52098586 |
T |
|
| Q |
316 |
cttatggaaccatgttcttattaaacatggaactatggaagatatcactggtgctgttgctgaatttctagccaattttgatgagttagatccgttaaag |
415 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52098585 |
cttatggaaccatgttcttgttaaacatggaactatggaagatatcactggtgctgttgctgaatttctagccaattttgatgagttagatccgttaaag |
52098486 |
T |
|
| Q |
416 |
cgaccatgcaagcttcgatttcactttgctgatgacaatgcactccttgcagctattgcaactaatagtaagcttcttcttgatttttcttatgggaagn |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52098485 |
cgaccatgcaagcttcgatttcactttgctgatgacaatgcactccttgcagctattgcaactaatagtaagcttcttcttgatttttcttatgggatga |
52098386 |
T |
|
| Q |
516 |
nnnnnnttgaaagaaaatatgaacttcggttcaagctcgataagcaaaacttcacctaccattctgttttcctagtcaaaagtctctatttgaaatcatt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
52098385 |
aaaaaattgaaagaaaatatgaacttcggttcaagctcgataagcaaaacttcacctaccattctgttttcctattcaaaagtctctatttgaaatcatt |
52098286 |
T |
|
| Q |
616 |
aagctatttgacaagtgaggtagcttcttcgatcgtttcgaatttggatcatcttgagaatttaacgatcaccgattgttgtggattacaatctttgttc |
715 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52098285 |
aagctatttgacaagtgaggtagcttcttcgatcgtttcgaatttggatcatcttgagaatttaacgatcaccgattgttgtggattacaatctttgttc |
52098186 |
T |
|
| Q |
716 |
attgaatctgaatcaaagcttcacaagttaacaatcttggattgcttgcagttgaagtctcttcatcttagaacttctaaacttagatcatttcgatatc |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
52098185 |
attgaatctgaatcaaagcttcacaagttaacaatcttggattgcttgcagttgaagtctcttcatcttagaacttctaaacttaaatcatttcgatatc |
52098086 |
T |
|
| Q |
816 |
gcgggcttcttccacggatttggccagaatctcatttcaacttgtgccatgccatccttgatttcagacaagg-ctaagctgcagggatttgagtgctca |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
52098085 |
gcgggcttcttccacggatttggccagaatctcatttcaacttgtgccatgccatccttgatttcagacaaggcctaagctgcagggatttgagtgctca |
52097986 |
T |
|
| Q |
915 |
agattttgatgaaatactattaaccataaagaattctgaagttcttactttatgtg-atggac-tttgaggtatgctct |
991 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
52097985 |
agattttgatgaaatactattaaccataaagaattctgaagttcttactttatgtgaatggacttttgaggtatgctct |
52097907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 583 - 979
Target Start/End: Complemental strand, 52091223 - 52090825
Alignment:
| Q |
583 |
tttcctagtcaaaagtctctatttgaaatcattaagctatttgacaagtgaggtagcttcttcgatcgtttcgaatttggatcatcttgagaatttaacg |
682 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| || || |||||||||||||||||||||||||||| | |
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|
| T |
52091223 |
tttcttagtcaaaagtctctgtttgaaatcattaacctatttgacaagtgaggtaacttcttcaattgtctcgaatttggatcatcttgagaatttaatg |
52091124 |
T |
|
| Q |
683 |
atcaccgattgttgtggattacaatctttgttcattgaatctgaatcaaagcttcacaagttaacaatcttggattgcttgcagttgaagtctcttcatc |
782 |
Q |
| |
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||||| |||||||||||||| |||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
52091123 |
atcactgattgttgtggattgcaatctttgttcgttgaatctgaatcaaagtttctcaagttaacaatcttagattgcttgcaattgaagtctcttcatc |
52091024 |
T |
|
| Q |
783 |
ttagaacttctaaacttagatcatttcgatatcgcgggcttcttccacggatttggccagaatctcatttcaacttgtgccatgccatccttgatttcag |
882 |
Q |
| |
|
|||| ||||||||||||| ||| ||||| |||||||| | |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| || |
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|
| T |
52091023 |
ttagcacttctaaacttaaatcttttcgttatcgcggacctcttcctcggatttggccaggatctcatttcaacttgtgtcatgccatccttgattttag |
52090924 |
T |
|
| Q |
883 |
acaa-ggctaagctgcagggatttgagtgctcaagattttgatgaaatactattaaccataaagaattctgaagttcttactttatgtg-atggacttt |
979 |
Q |
| |
|
| || ||||||| || ||||||||||||||||||||||||||||||| |||| | ||||||||||||||| || ||||||||||||||| ||||||||| |
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|
| T |
52090923 |
ataagggctaagttgtagggatttgagtgctcaagattttgatgaaacactactgaccataaagaattctaaaattcttactttatgtgaatggacttt |
52090825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 218 - 478
Target Start/End: Complemental strand, 52091585 - 52091320
Alignment:
| Q |
218 |
tttagatatttgccagatgaaattctaggctgcatagtatcttttctaccaaatgaatatgcacttgaaaccagcctcatatc-----taccaggtggag |
312 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||| |||| ||||||||||| ||| || ||||| |
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|
| T |
52091585 |
tttagaaatttgccagatgaaactctaggctgcataatatctcttctacctaatgaatatgcacttcaaacaagcctcatatcatatctactagatggag |
52091486 |
T |
|
| Q |
313 |
agacttatggaaccatgttcttattaaacatggaactatggaagatatcactggtgctgttgctgaatttctagccaattttgatgagttagatccgtta |
412 |
Q |
| |
|
| |||| |||||||| |||||| | |||||||||||||| |||||||||||| ||| | |||||||||||||| | |||||||| |||| ||||| ||| |
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|
| T |
52091485 |
aaacttgtggaaccaagttcttgtcaaacatggaactatagaagatatcactagtgtttttgctgaatttctaacaaattttgaagagtgggatccatta |
52091386 |
T |
|
| Q |
413 |
aagcgaccatgcaagcttcgatttcactttgctgatgacaatgcactccttgcagctattgcaact |
478 |
Q |
| |
|
|||||||| || ||||||| ||||||||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
52091385 |
aagcgaccgtgaaagcttcaatttcactttgatgatgacaatatactctttgcagctattgcaact |
52091320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 598 - 856
Target Start/End: Original strand, 7659815 - 7660073
Alignment:
| Q |
598 |
tctctatttgaaatcattaagctatttgacaagtgaggtagcttcttcgatcgtttcgaatttggatcatcttgagaatttaacgatcaccgattgttgt |
697 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||| || || |||| | ||||||||||||||||||||| |||| ||| | |
|
|
| T |
7659815 |
tctctatttgaaatcaataagctatttgactagtgaggtagcttcatccattatttcaagtttggatcatcttgagaatttggtaatcatttcatgtaat |
7659914 |
T |
|
| Q |
698 |
ggattacaatctttgttcattgaatctgaatcaaagcttcacaagttaacaatcttggattgcttgcagttgaagtctcttcatcttagaacttctaaac |
797 |
Q |
| |
|
||||| ||||||||| |||||| || | | |||||||||||||||| |||||||||||||| || ||||| | |||||| |||| ||||||||||| |
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|
| T |
7659915 |
ggattgcaatctttgagcattgactccaattttgagcttcacaagttaactatcttggattgcttacaattgaaatatcttcaccttaaaacttctaaac |
7660014 |
T |
|
| Q |
798 |
ttagatcatttcgatatcgcgggcttcttccacggatttggccagaatctcatttcaac |
856 |
Q |
| |
|
| | |||||||| || | | || | |||||| |||||| ||| |||| |||||||||| |
|
|
| T |
7660015 |
tcaaatcatttcaatttagaggacctcttccttggattttgcctgaatttcatttcaac |
7660073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 7659442 - 7659517
Alignment:
| Q |
249 |
gcatagtatcttttctaccaaatgaatatgcacttgaaaccagcctcatatctaccaggtggagagacttatggaa |
324 |
Q |
| |
|
||||||| ||||||||||||||||||| || | ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
7659442 |
gcatagtttcttttctaccaaatgaatcatcaatggaaaccatcctcatatctacaaggtggagagacttatggaa |
7659517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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