View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4419-Insertion-11 (Length: 299)

Name: NF4419-Insertion-11
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4419-Insertion-11
NF4419-Insertion-11
[»] chr3 (4 HSPs)
chr3 (19-299)||(1580652-1580934)
chr3 (180-280)||(3664098-3664201)
chr3 (19-79)||(3663968-3664028)
chr3 (27-79)||(41404386-41404438)
[»] chr7 (3 HSPs)
chr7 (19-299)||(39827792-39828076)
chr7 (19-299)||(30464692-30464977)
chr7 (19-299)||(8161094-8161373)
[»] chr1 (2 HSPs)
chr1 (19-299)||(32984038-32984323)
chr1 (22-213)||(3290213-3290406)
[»] chr2 (4 HSPs)
chr2 (19-205)||(17140105-17140293)
chr2 (20-299)||(31391997-31392282)
chr2 (28-151)||(9259757-9259882)
chr2 (246-299)||(17140313-17140366)
[»] chr6 (1 HSPs)
chr6 (20-227)||(35092041-35092256)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 1580934 - 1580652
Alignment:
Q  19 gggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccatctgtattcaaccaaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  1580934 gggaaaagccactaatccactttccttcagcgtttcgaaaaagctctccattaccaactgagttatctcttttactagccccatctgtattcaaccaaat 1580835  T
Q  117 tcaatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcacc 216  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1580834 ccaatcgtcctccggtttcttctacataacatcaatttccactcgatgcttagtatgcccactcacaacactattatccgcttgcttatattgctgcacc 1580735  T
Q  217 caacccataatatgtcaagggtggctggagcgaattcgaacctcaccatgcacttctctattacgccacatccacagaaaatg 299  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1580734 caacccataatatgccaagggtggctggagcgaattcgagcctcaccatgcacttctctattacgccacatccacagaaaatg 1580652  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 3664098 - 3664201
Alignment:
Q  180 cacaacactattatccgcttgcttatattgctgcacccaacccataat---atgtcaagggtggctggagcgaattcgaacctcaccatgcacttctcta 276  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||   | | ||||| ||| ||| || || |||| | ||||||||||||||||||    
T  3664098 cacaacattattatccgcttgcttatattgttgcacccaacccataataccacgccaaggatggttggggcaaactcgagcatcaccatgcacttctcta 3664197  T
Q  277 ttac 280  Q
    ||||    
T  3664198 ttac 3664201  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 3663968 - 3664028
Alignment:
Q  19 gggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctga 79  Q
    |||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||    
T  3663968 gggaaaagccactaatccacttcccttcagcatttcgaaaaatccctccactacgagctga 3664028  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 41404386 - 41404438
Alignment:
Q  27 ccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctga 79  Q
    ||||||||||| ||||||||| | ||| ||||||||| |||||||| ||||||    
T  41404386 ccactaatccattttccttcaacattttgaaaaagccatccactactagctga 41404438  T

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Target: chr7 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 39827792 - 39828076
Alignment:
Q  19 gggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccatctgtattcaaccaaat 116  Q
    ||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||  |||||  ||||||||| |||||||||||||||| |||    
T  39827792 gggaaaaaccactaatccactttccttcggcatttcgaaaaagtcctccactaccagctgaaatatctcttttactagcaccatctgtattcaaccgaat 39827891  T
Q  117 tcaatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcacc 216  Q
     ||| |||||||   ||||||| |||||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||||| || ||||| ||||||    
T  39827892 ccaaccgtcctctagtttcttccacataacatcaacttccactcgatgcttagtatgctcacccacaacactattatccgcttgttt-tattgttgcacc 39827990  T
Q  217 caacccataatat---gtcaagggtggctggagcgaattcgaacctcaccatgcacttctctattacgccacatccacagaaaatg 299  Q
    ||||||||||||    | || |||||||||| |||||||||| | |||||||||| ||||||||| ||||||||||||||||||||    
T  39827991 caacccataatactacgccaggggtggctggggcgaattcgagcatcaccatgcagttctctattgcgccacatccacagaaaatg 39828076  T

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Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 30464692 - 30464977
Alignment:
Q  19 gggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccatctgtattcaaccaaat 116  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||  |||||  ||| || ||||||| ||||||||||| |||    
T  30464692 gggaaaagccaccaatccactttccttcagcatttcgaaaaatccctccactaccagctgaaatatctcttttgctggccccatatgtattcaaccgaat 30464791  T
Q  117 tcaatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcacc 216  Q
     ||| ||||||  | ||||||| |||||||||||| ||||||||||||||||||| |  ||| ||||||||||||||| ||||| ||||| |  ||||||    
T  30464792 ccaaccgtcctttggtttcttccacataacatcaacttccactcgatgcttagtatgttcacccacaacactattatctgcttgtttataattttgcacc 30464891  T
Q  217 caacccataatat---gtcaagggtggctggagcgaattcgaacctcaccatgcacttctctattacgccacatccacagaaaatg 299  Q
    ||||| |||||||   | ||  |||| |||| ||||| || | ||||||||||||||||| |||| |||||| |||||||||||||    
T  30464892 caacctataatattacgccagaggtgtctggggcgaagtcaagcctcaccatgcacttctatattgcgccacgtccacagaaaatg 30464977  T

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Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 8161094 - 8161373
Alignment:
Q  19 gggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccatctgtattcaaccaaat 116  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||||||| ||||  |||||  |||||  ||||||| || ||||||||        
T  8161094 gggaaaagccactaatccactttccttatgcatttcgaaaaagccctccactaccaactgaaatatctcttttaccggccccatttgcattcaacc---- 8161189  T
Q  117 tcaatcgtcctccgatttcttctacataacatcaattt----ccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctg 212  Q
          |||||| | ||||||| |||||||||||| ||    |||||||||||||| || |  ||| ||||||||||||||||||||| |||||||| ||    
T  8161190 ------gtcctctggtttcttccacataacatcaacttaattccactcgatgcttaatatgttcacccacaacactattatccgcttgtttatattgttg 8161283  T
Q  213 cacccaacccataa---tatgtcaagggtggctggagcgaattcgaacctcaccatgcacttctctattacgccacatccacagaaaatg 299  Q
     |||||||||||||   || |  | |||  ||||| ||||||| ||  ||||||||||||||||||||| ||||||||||||||||||||    
T  8161284 tacccaacccataatactacgctaggggatgctggggcgaatttgagtctcaccatgcacttctctattgcgccacatccacagaaaatg 8161373  T

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Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 32984323 - 32984038
Alignment:
Q  19 gggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccatctgtattcaaccaaat 116  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| |||||  |||||  |||||||||||||||| ||||||||| |||    
T  32984323 gggaaaagccactaatccattttccttcagcatttcaaaaaagccctccactaccggctgaaatatctcttttactagccccatctttattcaaccgaat 32984224  T
Q  117 tcaatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcacc 216  Q
     ||| |||||||   ||||||| |||||| ||||| |||||||||||||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  32984223 ccaaccgtcctctcgtttcttccacataatatcaacttccactcgatgcttactttgcccaccgacaacactattatctgcttgcttatattgctgcacc 32984124  T
Q  217 caacccataatatg---tcaagggtggctggagcgaattcgaacctcaccatgcacttctctattacgccacatccacagaaaatg 299  Q
    ||| ||||||||     |||||||||| ||| ||||||||||  || |||||||||||||||||| ||||||||| ||||||||||    
T  32984123 caatccataatactacatcaagggtggttggggcgaattcgagtcttaccatgcacttctctattgcgccacatctacagaaaatg 32984038  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 3290406 - 3290213
Alignment:
Q  22 aaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccatctgtattcaaccaaattca 119  Q
    ||||| ||||||||||||| | || ||  |||| ||||||||||||||||||||||||  |||||  ||||||| |  ||||||||||||||||||| ||    
T  3290406 aaaagtcactaatccacttccttttaggatttcaaaaaagccctccactaccagctgaaatatctcttttactaacttcatctgtattcaaccaaatcca 3290307  T
Q  120 atcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgc 213  Q
    | ||||||| | |||||||  ||| ||||||| ||||||| ||||||| ||| |||||  ||||||||||||||||||||||||||||||||||    
T  3290306 accgtcctcgggtttcttccgcatgacatcaacttccacttgatgcttggtatgcccatccacaacactattatccgcttgcttatattgctgc 3290213  T

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Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 17140105 - 17140293
Alignment:
Q  19 gggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctg--agttatcttttactagccccatctgtattcaaccaaat 116  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||  |  | ||||||||||||| ||||||||||||||| |||    
T  17140105 gggaaaagccactaatccacttcccttcagcatttcgaaaaagccctccactaccagttggaatatctcttttactagccacatctgtattcaaccgaat 17140204  T
Q  117 tcaatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttat 205  Q
     ||| |  |||| | ||||||| |||||||||||| ||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||    
T  17140205 ccaaccaccctctggtttcttccacataacatcaacttccactcgatgcttagtatgcccacccacaatactatcatccgcttgcttat 17140293  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 31392282 - 31391997
Alignment:
Q  20 ggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccatctgtattcaaccaaatt 117  Q
    |||||||||| |||||||||| |||||| | ||| |||| | || |||||| |||||||   |||||  |||||||| ||||| ||||||||||| |||     
T  31392282 ggaaaagccaataatccacttcccttcatcattttgaaacaaccatccacttccagctggaatatctcttttactagacccatttgtattcaaccgaatc 31392183  T
Q  118 caatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcaccc 217  Q
    ||| | |||||   ||| |||||||||||| ||| |||  |||||||||||||| |||||| |||| |||||||||| || |||||||||||||||||||    
T  31392182 caaccatcctctagtttattctacataacaacaacttctgctcgatgcttagtatgcccacccacatcactattatctgcatgcttatattgctgcaccc 31392083  T
Q  218 aacccataa---tatgtcaagggtggctggagcgaattcgaacctc-accatgcacttctctattacgccacatccacagaaaatg 299  Q
    |||||||||   |||||   || ||| ||| ||||| |||| | || |||||||||||||||||| | ||||||||||||||||||    
T  31392082 aacccataatactatgttgtggatggttggggcgaactcgagcatcgaccatgcacttctctattgcaccacatccacagaaaatg 31391997  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 9259757 - 9259882
Alignment:
Q  28 cactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagtta--tcttttactagccccatctgtattcaaccaaattcaatcgtc 125  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||| | |||  ||  ||||||||||||||||||||||||||||| ||| ||| | ||    
T  9259757 cactaatccacttcccttcaacatttcgaaaaagccctccactaccggttgaaatatctcttttactagccccatctgtattcaaccgaatccaaccatc 9259856  T
Q  126 ctccgatttcttctacataacatcaa 151  Q
     ||   ||||||| ||||||||||||    
T  9259857 atctagtttcttccacataacatcaa 9259882  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 17140313 - 17140366
Alignment:
Q  246 gcgaattcgaacctcaccatgcacttctctattacgccacatccacagaaaatg 299  Q
    ||||| |||| | ||||||||||||||||||||  |||||||||||||||||||    
T  17140313 gcgaactcgagcatcaccatgcacttctctattgtgccacatccacagaaaatg 17140366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 35092041 - 35092256
Alignment:
Q  20 ggaaaagccactaatccactttccttcagcgtttcgaaaaagccctcc-actaccagctgagttatct--tttactagccccatctgtattcaaccaaat 116  Q
    |||||| |||||||||||||| ||| |||| ||| |||||||||| || ||||||||||||  |||||  |||||||||| ||| || |||||||| |||    
T  35092041 ggaaaaaccactaatccacttccctccagcattttgaaaaagcccccccactaccagctgaaatatctcttttactagcctcatttgcattcaaccgaat 35092140  T
Q  117 tcaatcgtcctccgatttcttctacataacatcaatttccactcgatgcttag----tacgccca-ctcacaacactattatccgcttgcttatattgct 211  Q
     ||| |||| |  ||||||||| ||||||||| || || ||  ||||||||||    || ||||| | ||||||||||||||||||||||||||||||||    
T  35092141 ccaaccgtcttatgatttcttccacataacatgaactttcatccgatgcttagtatatatgcccaccccacaacactattatccgcttgcttatattgct 35092240  T
Q  212 gcacccaacccataat 227  Q
    ||||||||| ||||||    
T  35092241 gcacccaacacataat 35092256  T

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