View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419-Insertion-12 (Length: 289)
Name: NF4419-Insertion-12
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419-Insertion-12 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 1182165 - 1181902
Alignment:
| Q |
8 |
tagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctggtaattcaact |
107 |
Q |
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| T |
1182165 |
tagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctgataattcaact |
1182066 |
T |
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| Q |
108 |
aattcacgggtgttattcttctcaatagctttgatttcttctatcataccttttttccatacacctatttgcattgcttctttgtaattaagtggttcag |
207 |
Q |
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| T |
1182065 |
aattcacgggtgttattcttctcaatagctttgatttcttgtatcataccttttctccatacacctatttgcattgcttctttgtaattaagtggttcag |
1181966 |
T |
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| Q |
208 |
catgaggtagaaatgcaaagtgaatgaactctcgttcatcattcactacactatcaggtagcac |
271 |
Q |
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| T |
1181965 |
catgaggtagaaatgcaaagtgaatgaactctcgttcatcattcactacactatcaggtagcac |
1181902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 270
Target Start/End: Complemental strand, 18194108 - 18193874
Alignment:
| Q |
36 |
ccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctggtaattcaactaattcacgggtgttattcttctcaatag |
135 |
Q |
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| T |
18194108 |
ccatcaggattcaatttcaccttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcttctcaatag |
18194009 |
T |
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| Q |
136 |
ctttgatttcttctatcataccttttttccatacacctatttgcattgcttctttgtaattaagtggttcagcatgaggtagaaatgcaaagtgaatgaa |
235 |
Q |
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| T |
18194008 |
atttgatttctttagtcatgactttcttccatacttcagtttgtattacttctttgtagtttagaggttctgcatcagctagtaatgcaaaatgaatgag |
18193909 |
T |
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| Q |
236 |
ctctcgttcatcattcactacactatcaggtagca |
270 |
Q |
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| T |
18193908 |
ttcacctttatcattcacaacattatcagatagca |
18193874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 263
Target Start/End: Original strand, 4959404 - 4959624
Alignment:
| Q |
43 |
gattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctggtaattcaactaattcacgggtgttattcttctcaatagctttgat |
142 |
Q |
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|||||| ||| ||||||||||| ||||| |||||||||||||||||||| || |||| ||||| | || | ||||||||||||||||||||||||||| |
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| T |
4959404 |
gattcaatttcaccttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcttctcaatagctttgat |
4959503 |
T |
|
| Q |
143 |
ttcttctatcataccttttttccatacacctatttgcattgcttctttgtaattaagtggttcagcatgaggtagaaatgcaaagtgaatgaactctcgt |
242 |
Q |
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|||||| |||| |||| |||||||| | |||| |||||||||||||| || || ||||| |||| || ||| |||||||| ||||||| || | | |
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| T |
4959504 |
ttcttcagtcatggctttgttccatacttcagtttgtattgcttctttgtagtttagaggttctgcatcagctagtaatgcaaaatgaatgagttcacct |
4959603 |
T |
|
| Q |
243 |
tcatcattcactacactatca |
263 |
Q |
| |
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||||||||||| |||||||| |
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| T |
4959604 |
tcatcattcacagcactatca |
4959624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 265
Target Start/End: Original strand, 32369432 - 32369660
Alignment:
| Q |
37 |
catctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctggtaattcaactaattcacgggtgttattcttctcaatagc |
136 |
Q |
| |
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|||| ||||||| ||| || |||||||| ||||| |||||||||||||||||||| || |||| ||| ||| | | ||||||||||||||||||| |
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| T |
32369432 |
catcaggattcaatttcactttgaaaatccatttaacatcaatggttttcttcttatcatgtaactcatctaggttccacgtgttattcttctcaatagt |
32369531 |
T |
|
| Q |
137 |
tttgatttcttctatcataccttttttccatacacctatttgcattgcttctttgtaattaagtggttcagcatgaggtagaaatgcaaagtgaatgaac |
236 |
Q |
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||||||||||| |||||| |||| ||||||| | |||| |||||||||||||||||||| |||| |||| || || || ||||| ||||||| |
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| T |
32369532 |
cttgatttcttcaatcatagctttcctccatacttcattttgaattgcttctttgtaattaagaggttatgcattagctaataaagcaaaatgaatgagt |
32369631 |
T |
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| Q |
237 |
tctcgttcatcattcactacactatcagg |
265 |
Q |
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|| | ||||||||| ||| |||||||||| |
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| T |
32369632 |
tcaccttcatcatttactgcactatcagg |
32369660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 8169741 - 8169841
Alignment:
| Q |
12 |
cttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctggtaattcaactaatt |
111 |
Q |
| |
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||||||||||| ||||||| |||| ||| |||||||| ||| || |||||||| |||||||||| |||| ||||||||||| ||||||| | |||||||| |
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| T |
8169741 |
cttgctttgtgctttgaaaatgtgtcatttggattcaatttgactttgaaaatccatttcacattaatgtttttcttcttcgctggtaagttaactaatt |
8169840 |
T |
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| Q |
112 |
c |
112 |
Q |
| |
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| |
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| T |
8169841 |
c |
8169841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 300733 - 300681
Alignment:
| Q |
182 |
tgcttctttgtaattaagtggttcagcatgaggtagaaatgcaaagtgaatga |
234 |
Q |
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||||||||||||||||| ||||||||||| | || |||||||||||||||| |
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| T |
300733 |
tgcttctttgtaattaattggttcagcatctgctaataatgcaaagtgaatga |
300681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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