View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4419-Insertion-13 (Length: 259)

Name: NF4419-Insertion-13

Description: NF4419

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4419-Insertion-13

[»] chr5 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 111; E-Value: 4e-56

Query Start/End: Original strand, 102 - 257

Target Start/End: Complemental strand, 21181821 - 21181666

Alignment:

Q	102	tatcagtatgttgcttaatttgcaagccnnnnnnnttataaatcttacttctacaatgatggtcatttcaaattcattttgcatatggtcagtaaattcc	201	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21181821	tatcagtgtgttgcttgatttgcaagccaaaaaaattataaatcttacttctacaatcatgctcatttcaaattcattttgcatatggtcagtaaattcc	21181722	T

Q	202	ttacacatgtttccatttgttgagctatagatgatattatcgacatagacttgaac	257	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21181721	ttacacatgttttcatttgttgagccatagatgatattatcgacatagacttgaac	21181666	T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 168 - 252

Target Start/End: Complemental strand, 17434098 - 17434014

Alignment:

Q	168	ttcaaattcattttgcatatggtcagtaaattccttacacatgtttccatttgttgagctatagatgatattatcgacatagact	252	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|
T	17434098	ttcaaattcgttttgcacagggtctgaaaattccttacgcatattttcatttgttcagccaaagatgatatcatcaacatagact	17434014	T

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