View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419-Insertion-2 (Length: 969)
Name: NF4419-Insertion-2
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 683; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 157 - 916
Target Start/End: Original strand, 46497971 - 46498732
Alignment:
| Q |
157 |
gaagaatatgaagaaaaggtgtgggttggagtgtagcttgtactagaagactgaagttggaaagcaaccaaccatttttattgcaacctcagagaattcg |
256 |
Q |
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| T |
46497971 |
gaagaatatgaagaaaaggtgtgggttggagtgtagcttgtactagaagactgaagttggaaagcaaccaaccatttttattgcaacctcagagaattcg |
46498070 |
T |
|
| Q |
257 |
atgctctctctcttcccnnnnnnnattttctatttcaaaatcatatactcttttgtttttagcatcctatgaaatatacgatttcagacattttatttta |
356 |
Q |
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| T |
46498071 |
atgctctctctctttcctttttt-attttctatttcaaaatcatatactcttttgtttttagcatcctatgaaatatacgatttcagacattttatttta |
46498169 |
T |
|
| Q |
357 |
atttaaacaagagtgctatttgcaattgaaggtaagttttacatattatttgtgttcaaagtttcgtacaatattgttaggagcagtctaactcattcgt |
456 |
Q |
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| T |
46498170 |
atttaaacaagagtgctatttgcaattgaaggtgagttttacatattatttgtgttcaaagtttcgtacaatattgttaggagcagtctaactcattcgt |
46498269 |
T |
|
| Q |
457 |
tccactatgttcagcccatgtgccagaatgatgttcgtatatacgggtaacataactacccaaaggattgaaaggaacgaagctagggatattaacactt |
556 |
Q |
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| T |
46498270 |
tccactatgttcagcccatgtgccagaatgatgttcgtatatacggataacataactacccataggattgaaaggaacgaagctagggatattaacactt |
46498369 |
T |
|
| Q |
557 |
gaaccaatattaattttaatttgtatttcatagtttataatcatgaagtgtagttcaattataaaatatattttgcagtcttatataatgacttaaa--- |
653 |
Q |
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| T |
46498370 |
gaaccaatattaattttaatttgtatttcatagtttataatcatgaggtgtagttcaattataaaatatattttgcagtcttatataatgacttaaaagg |
46498469 |
T |
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| Q |
654 |
ggataatacatagtatacgtatggaattagcttaatatctaatgaaaatataatatcttgcaacatcaaccatttttgtaaggatattttaaaattgatg |
753 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46498470 |
ggataatacatagtatacgtatggaattggcttaatatccaatgaaaatataatatcttgcaacatcaaccacttttgtaaggatattttaaaattgatg |
46498569 |
T |
|
| Q |
754 |
atataccatgaaaaagatagtgatatctctcatcaaatgataattaggagtagggatgacaaaagtgactaacgctccctaattaggagtggaaatacgc |
853 |
Q |
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| T |
46498570 |
atataccatgaaaaagatagtgatatctctcatcaaataataattaggagtagggatgacaaaagtgactaaccctccctaattaggagtggaaatacgc |
46498669 |
T |
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| Q |
854 |
tgagccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggcc |
916 |
Q |
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| T |
46498670 |
tgagccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggcc |
46498732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 857 - 966
Target Start/End: Original strand, 46498730 - 46498841
Alignment:
| Q |
857 |
gccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggccacatttgtag-ctg-tatatagatttatttttatacttgt |
954 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |
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| T |
46498730 |
gccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggccacatttgtagcctgttatatagatttatttttatactagt |
46498829 |
T |
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| Q |
955 |
gtatgacctttt |
966 |
Q |
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|||||||||||| |
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| T |
46498830 |
gtatgacctttt |
46498841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 46497829 - 46497908
Alignment:
| Q |
7 |
aaaatgggccatataaaagggatattcagaggggcaacgatgtgtgagaatattatgacacttgtctgtctcgatgataa |
86 |
Q |
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| T |
46497829 |
aaaatgggccatataaaagggatattcagaggggcaacgatgtgtgagaatattatgacacttgtctgtctcgatgataa |
46497908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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