View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4419-Insertion-4 (Length: 641)

Name: NF4419-Insertion-4
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4419-Insertion-4
NF4419-Insertion-4
[»] chr4 (1 HSPs)
chr4 (7-641)||(36748776-36749415)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 7 - 641
Target Start/End: Complemental strand, 36749415 - 36748776
Alignment:
Q  7 aatatacacatcacaagataaaaatatagaacaca-caaatcacttgtctctctttcaacatatcctcctactctgataggacgacaatagtacaaaaca 105  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||    
T  36749415 aatatacacatcacaagataaaaatatagaacacaacaaatcacttgtctctctttcaacatatccttctactctgataggac---aatagtacaaaaca 36749319  T
Q  106 gta--------cttgcatatgcacnnnnnnnngttattgactcaattactgaactctacataaatttagaagtaatgcatgtaatgttaattagctaata 197  Q
    |||        |||||||||||||        ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36749318 gtagaacattacttgcatatgcacaaacaaaagttattgactcaattactgaagtctacataaatttagaagtaatgcatgtaatgttaattagctaata 36749219  T
Q  198 cagttgnnnnnnntcaattaaannnnnnncttgctattttaagaattattacttctgaattcaaatttgtcaaaagaaatgaatagaaatacttccaaaa 297  Q
    ||||||       ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  36749218 cagttgaaaaaaatcaattaattttttttcttgctattttaagaattattacttctgaattcaaatttgtcaaaagaaatgaatagaa-tacttacaaaa 36749120  T
Q  298 gttttgtcnnnnnnnnnnnnnnnnnnnngaatacttccaaaagtgattcccagccacacgaacgtgagaaa--aacaaataaacgaaatatagtgttagt 395  Q
    ||||||||                    |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  36749119 gttttgtcaaaaaaaaaaaaaaaaaa--gaatacttccaaaagtgattcccagccacacgaacgcgagaaagaaacaaataaacgaaatatagtgttagt 36749022  T
Q  396 agttggtaggtaaatggatccatatttccttaattagaagggaaggtcaaaatatcaaaactcttaattaaagcttagaaaacgatatatatcagcccta 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36749021 agttggtaggtaaatggatccatatttccttaattagaagggaaggtcaaaatatcaaaactcttaattaaagcttagaaaacgatatatatcagcccta 36748922  T
Q  496 tgcttatgagttaagtatatttattatgtatatgtacaaacgtttgccgctataaaaagtaaacaaagaaattagaaaaactagttttctcatttcattg 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36748921 tgcttatgagttaagtatatttattatgtatatgtacaaacgtttgccgctataaaaagtaaacaaagaaattagaaaaactagttttctcatttcattg 36748822  T
Q  596 atcttattgttctaataaaaaagttctttgagatggattatcagta 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36748821 atcttattgttctaataaaaaagttctttgagatggattatcagta 36748776  T

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