View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4419-Insertion-6 (Length: 526)
Name: NF4419-Insertion-6
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419-Insertion-6 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 211 - 526
Target Start/End: Complemental strand, 14901840 - 14901528
Alignment:
| Q |
211 |
ttgtttatttgagatgctcattgtaga--aacaatgaatatgaatatgactgatattagttcaattctaaccaaataatacat--gagttgaataataca |
306 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
14901840 |
ttgtttatttgagatgctcattgtagataaacaatgaatatgaatatcactgatattagttcaatcctaaccaaataatacatttgagttgaataataca |
14901741 |
T |
|
| Q |
307 |
aataaaatcaactataaaaaactcaaagtggctcgtgacatttaagctaatgacatttactatgattgatttctcacaactgttattccaaacacaatac |
406 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14901740 |
aataaaatcaactatgaaaaactcaaagtggctcgtgacatttaagctaatgacatttactatgattgatttctcacaactgttattccaaacacaatac |
14901641 |
T |
|
| Q |
407 |
acactcaacttaaaaagagttcatcatttgaacaaagtatcaagggttcttaatctttattctcaacttcctagcaatctgtgctgctttaggatggcta |
506 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14901640 |
acactcaacttaaaa-------atcatttgaacaacgtatcaagggttcttaatctttattctcaacttccgagcaatctgtgctgctttaggatggcta |
14901548 |
T |
|
| Q |
507 |
ggcctcttattactatggta |
526 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
14901547 |
ggcctcttattactatggta |
14901528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 378 - 526
Target Start/End: Complemental strand, 14908442 - 14908291
Alignment:
| Q |
378 |
tctcacaactgttattccaaacacaatacacactcaacttaaaaagagttcatcat---ttgaacaaagtatcaagggttcttaatctttattctcaact |
474 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
14908442 |
tctcacaactattattccaaacacaatacacactcaagttgaaaatagttcatcatcgtttgaacaaagtatcaagggttcttaacctttattcttaact |
14908343 |
T |
|
| Q |
475 |
tcctagcaatctgtgctgctttaggatggctaggcctcttattactatggta |
526 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14908342 |
tccgagcaatctgtgctgctttaggatggctaggccttttattactatggta |
14908291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 14913014 - 14912933
Alignment:
| Q |
290 |
atgagttgaataatacaaataaaatcaactataaaaaactcaaagtggctcgtgacatttaagctaatgacatttactatga |
371 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
14913014 |
atgaattgaataattcaaatgaaatcaactataaaaaactcaaagtggctcgtgacattcaagctactgacatttactatga |
14912933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University