View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419-Insertion-8 (Length: 365)
Name: NF4419-Insertion-8
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419-Insertion-8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 57 - 365
Target Start/End: Original strand, 39435870 - 39436176
Alignment:
| Q |
57 |
caactacagctaaattacattacaaggtggagtaacctagacaaactagtggtttagtctaccaaacatgaaaatcgacaaaagtatgaggcttataaac |
156 |
Q |
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| T |
39435870 |
caactgcaactaaattacattacaaggtggagtaacctagacaaactagtgatttagtctaccaaatatgaaaatcgacaaaagtatgaggct--taaac |
39435967 |
T |
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| Q |
157 |
cttcagccaccatcagaaatgaaatttcaccatgttaacaatttcaatgatagctgannnnnnnnnnnnaaagctcctgtggttatgttccttccaaata |
256 |
Q |
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| T |
39435968 |
cttaagccaccaccaggattgaaatttcaccatgttaacaatttcaatgatagctgattttttgtttttaaagctcctgcagttgtgttccttccaaata |
39436067 |
T |
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| Q |
257 |
atctaattactcgtcaaccaaatagttggaagacaagtgcggatttcctttctcaaaagatggttgccaccttaagaaacattgacatcaaacctccata |
356 |
Q |
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| T |
39436068 |
atccaattactcgtcaaccaaatagttggaagacaagtgcggatgtcctttctaaaaagatggttgccaccttaagaaacattgacatcaaacctccatc |
39436167 |
T |
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| Q |
357 |
taatatttc |
365 |
Q |
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| T |
39436168 |
taatatttc |
39436176 |
T |
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Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 30688006 - 30687876
Alignment:
| Q |
79 |
caaggtggagtaacctagacaaactagtggtttagtctaccaaacatgaaaatcgacaaaagtatgaggcttataaaccttcagccaccatcagaaatga |
178 |
Q |
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| T |
30688006 |
caagatggagtaacctagacagacaaatggtttagtccaccagacatgaaaatcgacaaaagtatgagatttataaaccttaagccaccattatgaataa |
30687907 |
T |
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| Q |
179 |
aatttcaccatgttaacaatttcaatgatag |
209 |
Q |
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| T |
30687906 |
aatttcaccttgtcaacaatttcaatgatag |
30687876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 3093078 - 3092945
Alignment:
| Q |
74 |
cattacaaggtggagtaacctagacaaactagtggtttagtctaccaaacatgaaaatcgacaaaagtatgaggcttataaaccttcagccaccatcaga |
173 |
Q |
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| T |
3093078 |
cattacaaggtggaataacctagacaaattaatgatttagtccgccagacatgaaaatcgacaaaagtatgaggtttataaaccttaagccaccagcatg |
3092979 |
T |
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| Q |
174 |
aatgaaatttcaccatgttaacaatttcaatgat |
207 |
Q |
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| T |
3092978 |
aatggattttcaccctgtcaacaatttcagtgat |
3092945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 6376808 - 6376888
Alignment:
| Q |
75 |
attacaaggtggagtaacctagacaaactagtggtttagtctaccaaacatgaaaatcgacaaaagtatgaggcttataaa |
155 |
Q |
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||||||||||||||| |||||||||||||| ||||||| || | || ||||||||||||| |||||||| || |||||||| |
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| T |
6376808 |
attacaaggtggagttacctagacaaactaatggtttattccatcagacatgaaaatcgaaaaaagtataagccttataaa |
6376888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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