View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4419-Insertion-9 (Length: 348)

Name: NF4419-Insertion-9
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4419-Insertion-9
NF4419-Insertion-9
[»] chr4 (4 HSPs)
chr4 (9-348)||(35043915-35044239)
chr4 (8-295)||(35029678-35029972)
chr4 (8-297)||(35019594-35019880)
chr4 (26-296)||(35035791-35036061)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 35044239 - 35043915
Alignment:
Q  9 taaggactgaaacctatcatggaaaagttatatcccaaaatttcaaaggctatagatttcggacgaggagcaaaggctctatcgtttacggtgaagcatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  35044239 taaggactgaaacctatcatggaaaagttatatcccaaaatttcaaaggctatagatttgggacgagaagcaaaggctctatcgtttacagtgaagcatt 35044140  T
Q  109 gtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgtatttatcggctagcttccctaaggtgac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35044139 gtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgtatttatcggctagcttccctaaggtgac 35044040  T
Q  209 atgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttctggtggtggtgtctttgaagctacactagtatta 308  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||               ||||||||||||||||    
T  35044039 atgaggtggctgggatccacctaagaggtggaggtggccgatcaaaggccaagctccaccggcttctgg---------------agctacactagtatta 35043955  T
Q  309 atgcggcggcttctcagtagccaaaagagaacgaaaagaa 348  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35043954 atgcggcggcttctcagtagccaaaagagaacgaaaagaa 35043915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 35029972 - 35029678
Alignment:
Q  8 ataaggactgaaacctatcatggaaaagttatatcccaaaatttcaaaggctatagatttcggacgaggagcaaaggctctatcgtttacggtgaagcat 107  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||  |||||||||||| | |||||| | | | || ||||||||||| |||    
T  35029972 ataaggactgaaacctatcatggaaaagttataccctaaaatttcaaaggctgcagatttcggacgtgaagcaaaagttttgtcatttacggtgaaacat 35029873  T
Q  108 tgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaa-gataggtccgtatttatcggctagcttccctaaggtg 206  Q
    |||||| |||||||| ||||||||| |||||  |||||||||||||| ||||||| |||||| ||| ||||||||||| |||||||  || ||||||||     
T  35029872 tgtttcaccatttcataactgcttacaactaaggttttgtgaacacctaaacgaacggtgaaggatgggtccgtatttgtcggctaagtttcctaaggta 35029773  T
Q  207 acatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttct------ggtggtggtgtctttgaagc 295  Q
    || |||||||| | ||| ||||||||||||||||||||||| || || ||||| ||||| |||||||||      ||||||||||||||||||||    
T  35029772 acgtgaggtggttgggacccacctaagaggtggaggtggccaattaacggccatgctccgctggcttctggcggcggtggtggtgtctttgaagc 35029678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 35019880 - 35019594
Alignment:
Q  8 ataaggactgaaacctatcatggaaaagttatatcccaaaatttcaaaggctatagatttcggacgaggagcaaaggctctatcgtttacggtgaagcat 107  Q
    ||||||||| ||||| | ||||||| ||||||| ||||  |||||||||||||||||||| ||||| | |||||| | | | ||||||||||| || ||     
T  35019880 ataaggactcaaaccaaacatggaagagttataacccatgatttcaaaggctatagatttaggacgtgaagcaaaagttttgtcgtttacggtaaaacac 35019781  T
Q  108 tgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgtatttatcggctagcttccctaaggtga 207  Q
    |||||| |||||||| |||||||||  ||||  |||||||||||||| ||||||| ||||||||| ||||||||||| |||||||  || ||||||||||    
T  35019780 tgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacggtgaagatgggtccgtatttgtcggctaagtttcctaaggtga 35019681  T
Q  208 catgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttctggtggtggtgtctttgaagcta 297  Q
    | |||||||| | ||| |||||||||||||||||||||||||| || ||||| | ||| | ||||||    |||||||||||||||||||    
T  35019680 cgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggccatgatccgccggcttc---cggtggtgtctttgaagcta 35019594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 296
Target Start/End: Complemental strand, 35036061 - 35035791
Alignment:
Q  26 catggaaaagttatatcccaaaatttcaaaggctatagatttcggacgaggagcaaaggctctatcgtttacggtgaagcattgtttcgccatttcacaa 125  Q
    ||||||| ||||||| ||||  |||||||||||||||||||| ||||||| |||||||||| | |||||||| ||||| || ||| | || ||||| |||    
T  35036061 catggaagagttataacccatgatttcaaaggctatagatttgggacgagaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaa 35035962  T
Q  126 ctgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgtatttatcggctagcttccctaaggtgacatgaggtggctcggatc 225  Q
    ||||| | |||||  |||   |||||||| ||||| |  |||||||| | ||||||||| |||||||  || || ||||||| || |||| | | ||| |    
T  35035961 ctgctaacaactaaagttcgatgaacacctaaacgcactgtgaagatggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaac 35035862  T
Q  226 cacctaagaggtggaggtggccgatcaaaggccaagctccactggcttctggtggtggtgtctttgaagct 296  Q
    ||||||||||||||||||||||||| ||||||||||| |||   ||||| |||||||||||| ||||||||    
T  35035861 cacctaagaggtggaggtggccgattaaaggccaagcgccagcagcttcgggtggtggtgtcattgaagct 35035791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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