View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_high_11 (Length: 361)
Name: NF4419_high_11
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 96 - 339
Target Start/End: Original strand, 37017241 - 37017485
Alignment:
| Q |
96 |
gtcaaggaacatgatttaaatcttataagagattttgtaaaattaccatcagtacaacccctcttataaaaaataatgtaccctttcctaactttttcat |
195 |
Q |
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| T |
37017241 |
gtcaaggaacatgatttaaatcttataaaagattttgtaaaattaccatcagtacaacccctcttataaaaaataatgtaccctttcacaactttttcat |
37017340 |
T |
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| Q |
196 |
nnnnnnnnn-ttggataaaaagtaaaagacaacaaagaacattaacgagcgggatctttatgatattccacttgtgtgacgtt-ggaatctttaagagat |
293 |
Q |
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| T |
37017341 |
aaaaaaaaaattggataaaaagtaaaagacaacaaagaacattaacgagcgggatttttatggtattccatttgtgtgacattggggatctttaagagat |
37017440 |
T |
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| Q |
294 |
tttttgttttcacgtttgagattaatctaatccgatatgataacgg |
339 |
Q |
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| T |
37017441 |
ttttt-ttttcatgttcgagattaatctaatccgatatgataacgg |
37017485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 37038156 - 37038246
Alignment:
| Q |
96 |
gtcaaggaacatgatttaaatcttataagaga-ttttgtaaaattaccatcagtacaacccctcttataaaaaataatgtaccctttccta |
185 |
Q |
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| T |
37038156 |
gtcaagaaacatgatttaaatctcataagcgacttttataaaattaccattagtacaaccacccttatcaaaaataatttaccctttccta |
37038246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 37017167 - 37017208
Alignment:
| Q |
18 |
gtattaatttttgactagatggaatttttaattatagtttga |
59 |
Q |
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| T |
37017167 |
gtattaatttttgactagatggaatttttaattatagtttga |
37017208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 37038006 - 37038048
Alignment:
| Q |
18 |
gtattaatttttgactagatggaatttttaattatagtttgaa |
60 |
Q |
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| T |
37038006 |
gtattaatttttgactcgatggaatttttaattaaagtttgaa |
37038048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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