View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4419_high_15 (Length: 333)

Name: NF4419_high_15
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4419_high_15
NF4419_high_15
[»] chr8 (1 HSPs)
chr8 (1-333)||(7194822-7195162)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 7194822 - 7195162
Alignment:
Q  1 ctaaatatgtgtagtaataaattaaagccactatagtcattattgtttttatgagtggcagtggagtgttttttgtgtgaag---------aagaagaag 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  7194822 ctaaatatgtgtagtaataaattaaagccactatagtcattattgtttttatgagtggcagtggagtgttttttgtgtgaagaagaagaagaagaagaag 7194921  T
Q  92 cagcaaagtaactaagtaagtaacatggttagaagtcctaaggaggttaataaaggtgcttggtctcgtgaagaagatgatatcctctccaaatatgttg 191  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7194922 aagcaaagtaactaagtaagtaacatggttagaagtcctaaggaggttaataaaggtgcttggtctcgtgaagaagatgatatcctctccaaatatgttg 7195021  T
Q  192 tcattcatggagaaggaaaatggcaaaaggttgcccaaaatgcaggtgctaaattaattactgattttctctaatgcacaactatattataggttgccat 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7195022 tcattcatggagaaggaaaatggcaaaaggttgcccaaaatgcaggtgctaaattaattactgattttctctaatgcacaactatattata-gttgccat 7195120  T
Q  292 tcaatgtgttttcatgagacttgtatcctttgctgtctctcc 333  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  7195121 tcaatgtgttttcatgagacttgtatcctttcctgtctctcc 7195162  T

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