View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4419_high_16 (Length: 331)

Name: NF4419_high_16
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4419_high_16
NF4419_high_16
[»] chr3 (6 HSPs)
chr3 (18-315)||(1580940-1581260)
chr3 (102-303)||(3663662-3663863)
chr3 (100-292)||(41404076-41404267)
chr3 (21-95)||(3663886-3663959)
chr3 (26-88)||(41404302-41404364)
chr3 (176-232)||(9493734-9493790)
[»] chr1 (4 HSPs)
chr1 (18-321)||(32984329-32984655)
chr1 (100-292)||(3290523-3290715)
chr1 (133-219)||(44888160-44888246)
chr1 (18-88)||(3290415-3290484)
[»] chr7 (5 HSPs)
chr7 (23-321)||(30464360-30464681)
chr7 (18-271)||(8160824-8161088)
chr7 (100-306)||(39827475-39827681)
chr7 (22-88)||(39827716-39827782)
chr7 (130-221)||(40537781-40537872)
[»] chr2 (6 HSPs)
chr2 (121-303)||(17139792-17139973)
chr2 (122-292)||(9259451-9259617)
chr2 (193-292)||(39809383-39809482)
chr2 (18-95)||(9259665-9259742)
chr2 (96-258)||(31392321-31392483)
chr2 (22-88)||(17140029-17140095)
[»] chr6 (3 HSPs)
chr6 (122-321)||(19228337-19228534)
chr6 (18-89)||(35091963-35092034)
chr6 (100-165)||(35091865-35091930)
[»] chr5 (2 HSPs)
chr5 (155-285)||(11609545-11609675)
chr5 (181-303)||(12893096-12893218)
[»] chr8 (1 HSPs)
chr8 (114-235)||(12735392-12735515)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 1580940 - 1581260
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag--gttttgc-------------------- 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||                        
T  1580940 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagagaggttttgcaaaggttgagttgcacgttg 1581039  T
Q  96 -ttcaagtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtg 194  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581040 attcaagtgtggtggtgcataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtg 1581139  T
Q  195 ggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatggg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1581140 ggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgctcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgag 1581239  T
Q  295 caatgtccaactgggtttagt 315  Q
    ||||||||||||||| |||||    
T  1581240 caatgtccaactgggcttagt 1581260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 102 - 303
Target Start/End: Complemental strand, 3663863 - 3663662
Alignment:
Q  102 tgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtg 201  Q
    |||| ||||||  ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3663863 tgtgatggtacggaccctgcaaacaactaaagatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtg 3663764  T
Q  202 aagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtc 301  Q
    || ||||||||||||| ||||||||| |||| ||  ||||||| |||||||||||||| ||||||||||| |||||  ||| ||||||||| ||| ||||    
T  3663763 aaaatttgtcattcttttcgtgaggcaaatttgtgtgcagacgctcttgcaaacatggattgtgagcatgcgcctgatttgtgtgtgtatgagcagtgtc 3663664  T
Q  302 ca 303  Q
    ||    
T  3663663 ca 3663662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 100 - 292
Target Start/End: Complemental strand, 41404267 - 41404076
Alignment:
Q  100 agtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaag 199  Q
    ||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |    
T  41404267 agtgtggtggtgcataccctgcaaacaacttaggatggaagtgttgttggttggcgtctcattcaagaaattcgccggttgcttgctctggagtgggacg 41404168  T
Q  200 tgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 292  Q
    ||||||| ||||||||||| |||||| |||||||||  ||||||| |||| |||||||||||||||||  | |||||| ||||| ||||||||    
T  41404167 tgaagatctgtcattcttaccgtgagacgaattcgtgtgcagacgctctttcaaacatgggttgtgag-ttatgcctgtgttgcatgtgtatg 41404076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 3663959 - 3663886
Alignment:
Q  21 ggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagaggttttgc 95  Q
    |||||| ||||||| |||| || |||||||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  3663959 ggtagaggtaatgcgtatt-agtagagctttggggagcctttgatggtctccaaattgatagagagaggttttgc 3663886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 41404364 - 41404302
Alignment:
Q  26 atgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag 88  Q
    |||||| || |||||||||||| ||| | |||| ||| ||||||||||||||| |||||||||    
T  41404364 atgtaacgcgtatttagcagagattttgagagtttttaatggtctccaaattgttagagagag 41404302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 9493734 - 9493790
Alignment:
Q  176 gattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaatt 232  Q
    |||||||| ||||  |||||||||| ||||| | ||||| |||||||||||||||||    
T  9493734 gattgcttactttaaagtgggaagttaagatgtatcattattatcgtgaggcgaatt 9493790  T

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Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 32984329 - 32984655
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctaga--gagaggttttgc-------------------- 95  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||  ||||||||||||                        
T  32984329 ttgggtagatgtaatgcgtatttagcaaagctttggggagtctttgatggtctccaaattgctagacagagaggttttgcaaaggttgagttgcacgttg 32984428  T
Q  96 -ttcaagtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtg 194  Q
     ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  32984429 attcaagtgtggtggtgcataccctgcagacaactaaggatggaagtgttgttggttggtgtctcattcaagaaatttgccgattgcttgctctggagtg 32984528  T
Q  195 ggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatggg 294  Q
    ||||||| |||||| |||||||||||||||||||||||| |  ||||||| |||||| |||||||||||| |||| | | || ||||||||||||||| |    
T  32984529 ggaagtggagatttatcattcttatcgtgaggcgaattcatgtgcagacgctcttgcgaacatgggttgtaagcacgcgtctaggttgcgtgtgtatgag 32984628  T
Q  295 caatgtccaactgggtttagttctctg 321  Q
    ||||||||| || || |||||||||||    
T  32984629 caatgtccagctaggcttagttctctg 32984655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 100 - 292
Target Start/End: Original strand, 3290523 - 3290715
Alignment:
Q  100 agtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaag 199  Q
    |||||||| || | |||||| |||||||  ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |||||    
T  3290523 agtgtggttgtgcgtaccctgcagacaatcaaggatggaagtgttgttggttggcgtctcattcaagaatttcgtcaattgcttgctttggagttggaag 3290622  T
Q  200 tgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 292  Q
    |||| |||||||||||| |||||||||||||||| |  ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  3290623 tgaaaatttgtcattctaatcgtgaggcgaattcttgtgcagacgctcatgcaaacatgggttgtgagcatgcgcctgggttgcgtgtgtatg 3290715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 44888160 - 44888246
Alignment:
Q  133 gatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttat 219  Q
    |||||||| ||||||||||  |||||||| ||||||||| | | |||| ||||||||||| | |||||||||||||||| |||||||    
T  44888160 gatggaagcgttgttggtttccgtctcatccaagaaatttgtctattgtttgctttggagcgagaagtgaagatttgtctttcttat 44888246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 3290415 - 3290484
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag 88  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||||| ||||  |||||||||||||||    
T  3290415 ttgggtagatgtaatgtgtatttagcagagcttt-gagagtctttgatgatctctgaattgctagagagag 3290484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 321
Target Start/End: Complemental strand, 30464681 - 30464360
Alignment:
Q  23 tagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag--gttttgc---------------------ttca 99  Q
    |||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||  |||||||                     ||||    
T  30464681 tagatgtaatgcgtatttagcaaagctttggggagtcttggatggtctccaaattgctagagagagaggttttgcaaaagttgagttgcacgttaattca 30464582  T
Q  100 agtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaag 199  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||  |||||||||| ||||||||||||    
T  30464581 agtgtggtggtgcataccctgcagacaactaagaatggaagtgttgttggttggcgtctcattgaagaaattcgcatattgcttgctctggagtgggaag 30464482  T
Q  200 tgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatg 299  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||| |||||||||| ||||||||||||||| | | |||||||||||||||| | | ||    
T  30464481 tgaagatttgtcattcttatcatgaggcgaattcgtgtgcagacgctcttgcaaacttgggttgtgagcatgcgtcggggttgcgtgtgtatgagtagtg 30464382  T
Q  300 tccaactgggtttagttctctg 321  Q
    |||| || || ||| |||||||    
T  30464381 tccagctaggcttatttctctg 30464360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 8161088 - 8160824
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagaggttttgc---------------------t 96  Q
    ||||||||||||||||| ||||||||||| |||| | ||||||| |||| |||||||||| |||||||||||||||||                     |    
T  8161088 ttgggtagatgtaatgcgtatttagcagaactttggagagtcttggatgatctccaaatttctagagagaggttttgcaaaagttgagttgcaagttgat 8160989  T
Q  97 tcaagtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtggg 196  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||||||          |||||||||||||||||| |||||||||||||||||||||    
T  8160988 tcaagtgtggtggtgcataccctgcagacaactaaggatagaagtgttgt----------ctcattcaagaaattcgctgattgcttgctttggagtggg 8160899  T
Q  197 aagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatg 271  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||| |||||||||||||| |||||||||||    
T  8160898 aagtgaagatttgtcattcttatcgtgaagcgaattcgtgtgcagacgctcttgcaaacatggattgtgagcatg 8160824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 100 - 306
Target Start/End: Complemental strand, 39827681 - 39827475
Alignment:
Q  100 agtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaag 199  Q
    ||||||||||| |||| | | || ||||||||||||||| |||||| ||||||||||||||||||||||||||  ||| || ||||| | |||||||| |    
T  39827681 agtgtggtggtgcatagcttgcaaacaactaaggatggaggtgttgctggttggcgtctcattcaagaaattcctcgactgtttgctctagagtgggacg 39827582  T
Q  200 tgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatg 299  Q
    |||| |||||||||||||||||||| ||||||| ||  || |||| ||||||||||||  ||||||||||||  ||||||||||||||||||| ||| ||    
T  39827581 tgaaaatttgtcattcttatcgtgaagcgaatttgtgtgcggacgctcttgcaaacatttgttgtgagcatgctcctgggttgcgtgtgtatgagcagtg 39827482  T
Q  300 tccaact 306  Q
    || ||||    
T  39827481 tcaaact 39827475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 39827782 - 39827716
Alignment:
Q  22 gtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag 88  Q
    ||||||||||||||||| ||||||||||||  || ||||||||||||||||||||||||||||||||    
T  39827782 gtagatgtaatgcatatctagcagagctttgaggtgtctttgatggtctccaaattgctagagagag 39827716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 40537872 - 40537781
Alignment:
Q  130 aaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcg 221  Q
    |||||||||||| ||||||||||| | ||||| ||| |||||||  ||||| | |||||||||||| || | ||  | ||||||||||||||    
T  40537872 aaggatggaagtcttgttggttggtgactcatccaaaaaattcgtagattgttagctttggagtggaaaattaaagtgtgtcattcttatcg 40537781  T

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Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 121 - 303
Target Start/End: Complemental strand, 17139973 - 17139792
Alignment:
Q  121 cagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatc 220  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  17139973 cagacaactaaggatggaagtgtt-ttggttggcgtctaattcaataaattcgccgattgctttctttgaagtgggaagtgaagatttgtcattcttatc 17139875  T
Q  221 gtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtcca 303  Q
    |||||| ||||||||  ||||||  ||||||||||||||  ||||||||||  ||||||||||||||||||| ||| ||||||    
T  17139874 gtgaggtgaattcgtgtgcagacactcttgcaaacatggactgtgagcatgcacctgggttgcgtgtgtatgagcagtgtcca 17139792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 122 - 292
Target Start/End: Complemental strand, 9259617 - 9259451
Alignment:
Q  122 agacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||||||      
T  9259617 agacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccga----gtgctttggagtggggagtgaagatttgtcattcttatta 9259522  T
Q  222 tgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 292  Q
    || |||||||| ||  | ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  9259521 tggggcgaatttgtgtgtagacgctcttgcaaacatgggttatgagcatgcgcctgagttgcgtgtgtatg 9259451  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 292
Target Start/End: Original strand, 39809383 - 39809482
Alignment:
Q  193 tgggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 292  Q
    ||||||||||| | |||||||||||||||||| ||||||||||  ||||||  ||||||||||||||||||||||||||  ||| |||||||||||||||    
T  39809383 tgggaagtgaaaaattgtcattcttatcgtgaagcgaattcgtgtgcagacactcttgcaaacatgggttgtgagcatgctcctaggttgcgtgtgtatg 39809482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 9259742 - 9259665
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagaggttttgc 95  Q
    ||||||||||||||||||||||||  |||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  9259742 ttgggtagatgtaatgcatatttaaaagagctttggggagtcattgatggtctccgaattgctagagagaggttttgc 9259665  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 258
Target Start/End: Original strand, 31392321 - 31392483
Alignment:
Q  96 ttcaagtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgc-tttggagtg 194  Q
    ||||||||| ||||| |  ||||| |||| |||||||||||||||| ||||||||||| ||||||||||||  ||||  ||||||||||| ||||||||     
T  31392321 ttcaagtgtagtggtgcggaccctgcagataactaaggatggaagtattgttggttggtgtctcattcaag-gattcatcgattgcttgcttttggagta 31392419  T
Q  195 ggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatg 258  Q
    |||||||||||||| || || |||| |||| |||||||  |  ||| ||| |||||||||||||    
T  31392420 ggaagtgaagatttttcctttttattgtgatgcgaatttttgtgcatacgctcttgcaaacatg 31392483  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 17140095 - 17140029
Alignment:
Q  22 gtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag 88  Q
    ||||||||||||| |||||| |||| ||||  |||||||||||||||||||||||||||||||||||    
T  17140095 gtagatgtaatgcgtatttatcagaactttgtggagtctttgatggtctccaaattgctagagagag 17140029  T

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Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 122 - 321
Target Start/End: Original strand, 19228337 - 19228534
Alignment:
Q  122 agacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcg 221  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  19228337 agacaactaaggatgaaagtgatgttggttggcgtctcattcaagaaattcaccgattgcttgc-ttggagtgggaagtgaaga-ttgtcattcttatcg 19228434  T
Q  222 tgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctg 321  Q
    | |||| |||||||  | ||||  | || ||||||| ||||||||||||| | | |||||||||||||||| ||||||||||||| || |||||||||||    
T  19228435 taaggcaaattcgtgtgtagacacttttccaaacataggttgtgagcatgcgacggggttgcgtgtgtatgagcaatgtccaactaggcttagttctctg 19228534  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 35092034 - 35091963
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagagg 89  Q
    |||||||||||||||   ||||||||| |||||| |||||||||||||||||| | ||||||||||||||||    
T  35092034 ttgggtagatgtaatatgtatttagcatagctttggggagtctttgatggtcttcgaattgctagagagagg 35091963  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 35091930 - 35091865
Alignment:
Q  100 agtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaa 165  Q
    |||||||||||   |||||| || ||||||||||||||||||||||||||||| ||||||| ||||    
T  35091930 agtgtggtggtgtgtaccctgcacacaactaaggatggaagtgttgttggttgacgtctcaatcaa 35091865  T

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Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 11609675 - 11609545
Alignment:
Q  155 gtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaa 254  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  11609675 gtctcatttaagaaatttgccgattgcttgctttggagtgagaagtgaaaatttgtcattcttatcgtgaggcgaattcgtgtgcagacgctcttgcaaa 11609576  T
Q  255 catgggttgtgagcatgtgcctgggttgcgt 285  Q
    |||||||||| ||||| ||| ||||||||||    
T  11609575 catgggttgttagcatatgcatgggttgcgt 11609545  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 12893218 - 12893096
Alignment:
Q  181 cttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggt 280  Q
    |||||||||||||| ||||||||||||||||||||||||||||   | |||||||   |||||  | ||||||||||||||||| ||||||  |||| ||    
T  12893218 cttgctttggagtgagaagtgaagatttgtcattcttatcgtgtaccaaattcgtgtacagacacttttgcaaacatgggttgtaagcatgcacctgagt 12893119  T
Q  281 tgcgtgtgtatgggcaatgtcca 303  Q
    |||||||||||| ||| ||||||    
T  12893118 tgcgtgtgtatgagcagtgtcca 12893096  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 12735515 - 12735392
Alignment:
Q  114 taccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatt--tgtc 211  Q
    ||||||||| |||||||| |||| ||||||||||||||| |||||||||||| |||| || ||||| ||||||||| | |||||||| ||||||  |||     
T  12735515 taccctacaaacaactaaagatgaaagtgttgttggttgacgtctcattcaaaaaatccgtcgattacttgctttgcactgggaagttaagatttgtgtt 12735416  T
Q  212 attcttatcgtgaggcgaattcgt 235  Q
    ||||||||||| |||||| |||||    
T  12735415 attcttatcgtaaggcgagttcgt 12735392  T

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