View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_high_17 (Length: 310)
Name: NF4419_high_17
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_high_17 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 141 - 310
Target Start/End: Original strand, 43600745 - 43600914
Alignment:
| Q |
141 |
tcattcttttctttctctactgttgaagtgtataacannnnnnnnngtaattaaaataagcaggcactgcggttgatcaaggaattgcttacttcctcat |
240 |
Q |
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| T |
43600745 |
tcattcttttctttctctactgttgaagtgtataacatttttttttgtaattaaaataatcaggcactgcgtttgatcaaggaattgcttacttcctcat |
43600844 |
T |
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| Q |
241 |
gctggtggctcttctgatcacatatatgttccattgatttataattggcttaataataattattattatt |
310 |
Q |
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| T |
43600845 |
gctggtggctcttctgatcacatatatgttccattgatttataattggcttaataataataataattatt |
43600914 |
T |
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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 43600602 - 43600710
Alignment:
| Q |
1 |
tttggtactctttgttatctctgaagctcacaacttttctccttctccaacacccgcacctgca------cctgctccttcttgtgatggtaattaatgc |
94 |
Q |
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| T |
43600602 |
tttggtactctttgctatctctgaagctcacgacttttctccttctccaacacctgcacctgcacctgctcctgctccttctagtgatggtaattaatgc |
43600701 |
T |
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| Q |
95 |
ttcaaacac |
103 |
Q |
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| T |
43600702 |
ttcaaacac |
43600710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 32463889 - 32463822
Alignment:
| Q |
213 |
ttgatcaaggaattgcttacttcctcatgctggtggctcttctgatcacatatatgttccattgattt |
280 |
Q |
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| T |
32463889 |
ttgatcaaggaattgcttactttcttatgttggtggcgttggtgattacatacatgttccattgattt |
32463822 |
T |
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