View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4419_high_20 (Length: 259)

Name: NF4419_high_20
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4419_high_20
NF4419_high_20
[»] chr3 (7 HSPs)
chr3 (1-242)||(20016661-20016902)
chr3 (31-160)||(19811728-19811854)
chr3 (31-160)||(19837829-19837955)
chr3 (29-73)||(19848439-19848483)
chr3 (31-125)||(19955517-19955608)
chr3 (32-161)||(19988977-19989103)
chr3 (33-108)||(19818004-19818076)
[»] chr5 (3 HSPs)
chr5 (32-242)||(9814483-9814693)
chr5 (32-242)||(2319496-2319706)
chr5 (34-171)||(26355460-26355594)
[»] chr4 (1 HSPs)
chr4 (34-242)||(55864488-55864696)
[»] chr7 (3 HSPs)
chr7 (32-242)||(45887509-45887719)
chr7 (32-242)||(47331558-47331771)
chr7 (32-242)||(48259476-48259686)
[»] chr1 (1 HSPs)
chr1 (34-118)||(1716671-1716752)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 20016902 - 20016661
Alignment:
Q  1 tcaatgatgaatgagaagccatttaatgctatgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactg 100  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016902 tcaatgatgaatgagaagccattgaatgctatcatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactg 20016803  T
Q  101 cccattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgccttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016802 cccattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgccttt 20016703  T
Q  201 gaagtttcatttcactgggtggcgccacccacaagacaaatg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20016702 gaagtttcatttcactgggtggcgccacccacaagacaaatg 20016661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 19811728 - 19811854
Alignment:
Q  31 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattaca 130  Q
    |||||||| || ||||||||||||||||| |||||| ||||||   ||| |||  ||||| |||||||||| |||||| | |||||||||||||| | ||    
T  19811728 atgatggaagtcagggaagatttcatgctttcaccttctggtg---acagtgattcaactttcagaactgctcattttcttaaacccatttcaaactcca 19811824  T
Q  131 ttcatgaatcaccttttggttttaatccat 160  Q
    |||||||| || ||||||  ||||||||||    
T  19811825 ttcatgaaccagcttttgagtttaatccat 19811854  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 19837829 - 19837955
Alignment:
Q  31 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattaca 130  Q
    ||||||||||||||||||||||||||||| |||| |||   |||||| | ||||||||| |||||||||||||||||| | ||||| ||| |||| | ||    
T  19837829 atgatggaggtgagggaagatttcatgctttcacttgc---tggtgatagtgaagcaacactcagaactgcccattttcttaaacctattgcaaactcca 19837925  T
Q  131 ttcatgaatcaccttttggttttaatccat 160  Q
    || | ||| ||||||||  |||||| ||||    
T  19837926 ttgaagaaccaccttttaattttaagccat 19837955  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 19848439 - 19848483
Alignment:
Q  29 ctatgatggaggtgagggaagatttcatgctctcacctgctggtg 73  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  19848439 ctatgatggaggtgagggaagatttcatgctttcaccagctggtg 19848483  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 19955517 - 19955608
Alignment:
Q  31 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaa 125  Q
    |||||||||||||||||||| |||||||| ||||| ||||||| |   | |||  |||| |||||||| ||||||||| | ||||||||||||||    
T  19955517 atgatggaggtgagggaagagttcatgctttcaccagctggtgat---agtgatccaacactcagaacagcccattttcttaaacccatttcaaa 19955608  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 19988977 - 19989103
Alignment:
Q  32 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 131  Q
    |||||||||||| |||||||  |||||| ||||| |||||||   ||| |||| ||| ||||||||  ||||||||| | ||||||||||||||   |||    
T  19988977 tgatggaggtgaaggaagatcacatgctttcaccagctggtg---acagtgaaccaattctcagaatcgcccattttctcaaacccatttcaaacaccat 19989073  T
Q  132 tcatgaatcaccttttggttttaatccatc 161  Q
    | | ||| |||||| ||| |||||||||||    
T  19989074 tgaagaaccaccttctgggtttaatccatc 19989103  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 19818004 - 19818076
Alignment:
Q  33 gatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccatttt 108  Q
    ||||||||| || |||||||||||||| ||||||||   |||||||| |||  |||| ||||||||||| ||||||    
T  19818004 gatggaggttagagaagatttcatgctttcacctgc---tggtgacagtgatccaacactcagaactgctcatttt 19818076  T

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Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 9814483 - 9814693
Alignment:
Q  32 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 131  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  9814483 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 9814579  T
Q  132 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac 228  Q
    ||||||   |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || ||||||| ||| |||||  ||    
T  9814580 tcatgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgttac 9814679  T
Q  229 ccacaagacaaatg 242  Q
    |||||||| |||||    
T  9814680 ccacaagagaaatg 9814693  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 2319706 - 2319496
Alignment:
Q  32 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 131  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  2319706 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 2319610  T
Q  132 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac 228  Q
    | ||||   || ||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| |||    
T  2319609 ttatgaaccatgaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgtcac 2319510  T
Q  229 ccacaagacaaatg 242  Q
    |||||||| |||||    
T  2319509 ccacaagagaaatg 2319496  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 26355594 - 26355460
Alignment:
Q  34 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattc 133  Q
    ||||||| |||||||||||||||||||||||| | ||||    ||| |||||||||| ||||||  ||||||||| |||||||||||||||||| |||||    
T  26355594 atggaggagagggaagatttcatgctctcaccagatggtc---acagtgaagcaactttcagaatagcccattttctaaaacccatttcaaattccattc 26355498  T
Q  134 atgaatcaccttttggttttaatccatcatcaatgtct 171  Q
    |||||  ||||||||| ||||| |||||||||||||||    
T  26355497 atgaacaaccttttggctttaacccatcatcaatgtct 26355460  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 55864696 - 55864488
Alignment:
Q  34 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattc 133  Q
    |||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||   | |||||| |||||||||||||||||| |||||    
T  55864696 atggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatgactcattttctaaaacccatttcaaattccattc 55864600  T
Q  134 atga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccaccc 230  Q
    ||||   |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| |||||    
T  55864599 atgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggttggcgtcaccc 55864500  T
Q  231 acaagacaaatg 242  Q
    |||||| |||||    
T  55864499 acaagagaaatg 55864488  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 45887719 - 45887509
Alignment:
Q  32 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 131  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  45887719 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 45887623  T
Q  132 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac 228  Q
    | ||||   || ||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| |||    
T  45887622 ttatgaaccatgaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgtcac 45887523  T
Q  229 ccacaagacaaatg 242  Q
    |||||||| |||||    
T  45887522 ccacaagagaaatg 45887509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 47331558 - 47331771
Alignment:
Q  32 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 131  Q
    ||||| |||||||||||||||||||| |||||||  |   |||||||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  47331558 tgatgaaggtgagggaagatttcatgatctcaccaac---tggtgacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 47331654  T
Q  132 tcatga------atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgc 225  Q
    ||||||      |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| | ||||||| || ||||||| ||| |||||     
T  47331655 tcatgaaccatcatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggtctttgaaattccatttcaatggatggcgt 47331754  T
Q  226 cacccacaagacaaatg 242  Q
    ||||||||||| |||||    
T  47331755 cacccacaagagaaatg 47331771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 48259686 - 48259476
Alignment:
Q  32 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 131  Q
    ||||| |||||||||||||||||||| |||||||  | |||    ||| |||| ||||||| ||||  || |||||| |||||| ||||||||||| |||    
T  48259686 tgatgaaggtgagggaagatttcatgatctcaccaaccggtc---acagtgaaacaactcttagaatggctcattttctaaaactcatttcaaattccat 48259590  T
Q  132 tcatgaa---tcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac 228  Q
    |||||||   ||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| |||    
T  48259589 tcatgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgtcac 48259490  T
Q  229 ccacaagacaaatg 242  Q
    |||||||| |||||    
T  48259489 ccacaagagaaatg 48259476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 1716671 - 1716752
Alignment:
Q  34 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaaccca 118  Q
    |||||||||||||||||||||||||| ||||   ||||| |||| | |||| ||||  ||||||| ||||||||| | |||||||    
T  1716671 atggaggtgagggaagatttcatgctttcac---ctggttgtgagaatgaaccaacattcagaacagcccattttctcaaaccca 1716752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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