View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_high_22 (Length: 257)
Name: NF4419_high_22
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 43600983 - 43601231
Alignment:
| Q |
1 |
actgttctaatgaagttattatcggtaggaacatnnnnnnnctcatatttggtatttgttctggaaaaaatactgttagattattggcaggagagaggga |
100 |
Q |
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| T |
43600983 |
actgttctaatgaagttattatcggtaggaacataaaaaaactcatatttggtatttgttctggaaaaaatactgttagattattggcaggagagaggga |
43601082 |
T |
|
| Q |
101 |
cattttaatttactctatttttattgttttgaaacgatactttttctttactcaataaaagctctttcttaattatttttacaaatctcattcatgagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
43601083 |
cattttaatttactctatttttattgttttgaaacgatactttttctttacttaataaaagcactttcttaattatatttacaaatctcattcatgagaa |
43601182 |
T |
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| Q |
201 |
tgtaataatgtaaaatgaaatgaactatatgcgtatctttcttcatctc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43601183 |
tgtaataatgtaaaatgaaatgaactatatgcgtatctttcttcttctc |
43601231 |
T |
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