View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_high_24 (Length: 254)
Name: NF4419_high_24
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 1543767 - 1543993
Alignment:
| Q |
11 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaa |
110 |
Q |
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| T |
1543767 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaa |
1543866 |
T |
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| Q |
111 |
gctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggcggataccctccccacgacatgagtggacctcctcctcctcccaaca |
210 |
Q |
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| T |
1543867 |
gctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggtggataccctccccacaacatgagtggacctcctcctcctcccaaca |
1543966 |
T |
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| Q |
211 |
gtggatatcgtgctcctcaaaataact |
237 |
Q |
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| T |
1543967 |
gtggatatcgtgctcctcaaaataact |
1543993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 32421641 - 32421730
Alignment:
| Q |
114 |
ggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggcggataccctccccacgacatgagtggacctcctcctcct |
203 |
Q |
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| T |
32421641 |
ggatacgcccctccaaatcaaggtggatatgctcctccaaatgcaggtggtggataccctccccccaacatgagcggaccccctcctcct |
32421730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 32421436 - 32421490
Alignment:
| Q |
11 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaat |
65 |
Q |
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| T |
32421436 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctcccaacaat |
32421490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 32421524 - 32421610
Alignment:
| Q |
69 |
taccctcccaacaatggtggcggataccctttcaacaaccaagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
155 |
Q |
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| T |
32421524 |
taccctcccaacaatgctggcggataccctcctaacaatcaagctggatactcccctccaaatcaatctggatactcccctccaaat |
32421610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 32421611 - 32421658
Alignment:
| Q |
108 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
155 |
Q |
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| T |
32421611 |
caagctggatacgcccctccaaatcaaggcggatacgcccctccaaat |
32421658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 32421743 - 32421785
Alignment:
| Q |
195 |
cctcctcctcccaacagtggatatcgtgctcctcaaaataact |
237 |
Q |
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| T |
32421743 |
cctcctcctcccaacagtggatacggtgctcctcaaaataact |
32421785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 32425686 - 32425738
Alignment:
| Q |
108 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcagg |
160 |
Q |
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||||||||| | ||| || |||||||||| ||||||||| ||||||||||||| |
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| T |
32425686 |
caagctggacacgcctctgcaaatcaaggcggatacgcttctccaaatgcagg |
32425738 |
T |
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