View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_high_32 (Length: 237)
Name: NF4419_high_32
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_high_32 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 7195444 - 7195224
Alignment:
| Q |
17 |
tcttcgtcggtagagatatcgcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccacaccgctttaaacctacaccat |
116 |
Q |
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| T |
7195444 |
tcttcgtcggtagagatatggcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccacaccgctttaaacctactccat |
7195345 |
T |
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| Q |
117 |
ataaaccaaagagaccaatcgaaaactatttaagaaaaattataatagacaacatgatcttctgccacggccaaatcggattcaaaatctaaggacatgc |
216 |
Q |
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| T |
7195344 |
ataaaccaaagagaccaatcgaaaactatttaagaaaaattataatagacaacatgatcttctgccacggccaaatcggattcaaaatctaaggacatgc |
7195245 |
T |
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| Q |
217 |
atggaacaatcttgtatcctc |
237 |
Q |
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||||||||||||||||||||| |
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| T |
7195244 |
atggaacaatcttgtatcctc |
7195224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 9622004 - 9621946
Alignment:
| Q |
38 |
cctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
96 |
Q |
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| T |
9622004 |
cctctctttatatctggtctaagataattcatccatctaagtctacaacttttcccaca |
9621946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 52071733 - 52071792
Alignment:
| Q |
37 |
gcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
96 |
Q |
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| T |
52071733 |
gcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccaca |
52071792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 48892615 - 48892673
Alignment:
| Q |
38 |
cctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
96 |
Q |
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| T |
48892615 |
cctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccaca |
48892673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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