View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_high_4 (Length: 482)
Name: NF4419_high_4
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 11 - 464
Target Start/End: Original strand, 16563956 - 16564409
Alignment:
| Q |
11 |
cacagatgtgtaaaataatttatgcggaggagatggcacctcaccttaacttaggaaaaaccttcaacctcaatgaatgactatgaataaaattatgctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16563956 |
cacagatgtgtaaaataatttatgcggaggagatggcacctcaccttaacttaggaaaaaccttcaacctcaatgaatgactatgaataaaattatgctt |
16564055 |
T |
|
| Q |
111 |
actttacccttgtggagttctaacctagccacaaattctatcatgaattacttaatgtatgtttgaattaacagtaaaatttataaaatcatggtaaatt |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16564056 |
actctacccttgtggagttctaacctagccacaaattctatcatgaattacttaatgtatgtttgaattaacagtaaaatttataaaatcatggtaaatt |
16564155 |
T |
|
| Q |
211 |
attactgtaacaaaattatggtgccaccgtgatttcttcaaccttgccaacttaacacttgtgaagatgcactacattgatactatgtaaaataatttag |
310 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16564156 |
attactgtaacaaaattatagtgccaccgtgatttcttcaaccttgccaacttaacacttgtgaagatgcactacattgatactatgtaaaataatttag |
16564255 |
T |
|
| Q |
311 |
atgagtgacatgtgatagaaaagaaagaaaataataagctttgaattaacatgggaaaaagccaaagggaatgaagctattgttcaccttcactaaattt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16564256 |
atgagtgacatgtgatagaaaagaaagaaaataataagctttgaattaacatgggaaaaagccaaagggaatgaagctattgttcaccttcactaaactt |
16564355 |
T |
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| Q |
411 |
tttgctaatgtctatttccctccgtcctaaaatataagcaaaaattggtctaca |
464 |
Q |
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| T |
16564356 |
tttgctaatgtctatttccttccgtcctaaaatataagcaaaaattggtctaca |
16564409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 22162236 - 22162264
Alignment:
| Q |
426 |
ttccctccgtcctaaaatataagcaaaaa |
454 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
22162236 |
ttccctccgtcctaaaatataagcaaaaa |
22162264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 460
Target Start/End: Complemental strand, 3739927 - 3739897
Alignment:
| Q |
430 |
ctccgtcctaaaatataagcaaaaattggtc |
460 |
Q |
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| T |
3739927 |
ctccgtcctaaaatataagcaaaaattggtc |
3739897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Original strand, 3739808 - 3739841
Alignment:
| Q |
427 |
tccctccgtcctaaaatataagcaaaaattggtc |
460 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
3739808 |
tccctccgtcccaaaatataagcaaaaattggtc |
3739841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Complemental strand, 1554951 - 1554918
Alignment:
| Q |
427 |
tccctccgtcctaaaatataagcaaaaattggtc |
460 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
1554951 |
tccctccgtcctaaaatataaacaaaaattggtc |
1554918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Original strand, 46829047 - 46829076
Alignment:
| Q |
431 |
tccgtcctaaaatataagcaaaaattggtc |
460 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
46829047 |
tccgtcctaaaatataagcaaaaattggtc |
46829076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Complemental strand, 46829158 - 46829125
Alignment:
| Q |
427 |
tccctccgtcctaaaatataagcaaaaattggtc |
460 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
46829158 |
tcccttcgtcctaaaatataagcaaaaattggtc |
46829125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 455
Target Start/End: Original strand, 38940748 - 38940776
Alignment:
| Q |
427 |
tccctccgtcctaaaatataagcaaaaat |
455 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
38940748 |
tccctccgtcctaaaatataagcaaaaat |
38940776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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