View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4419_high_6 (Length: 428)
Name: NF4419_high_6
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 38 - 414
Target Start/End: Original strand, 9696456 - 9696833
Alignment:
| Q |
38 |
taattgattttctcccttaaattttgtttacttctttttatcaaactttaatttatactaaattaaatcaaagaaaagatgnnnnnnnagctatttatct |
137 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9696456 |
taattgtttttctcccttaaattttttttacttctttttatcaaactttaatttatactaaattaaatcaaagaaaagatgtttttttagctatttatct |
9696555 |
T |
|
| Q |
138 |
attaagagttttaagtgttacgcgatcaaattaaataataactactcaacttcactaggtgatgnnnnnnnntaatcacatgattcaagtaatattttgt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9696556 |
attaagagttttaagtgttacgcgatcaaattaaataataactacttaacatcactaggtgatgaaaaaaa-taatcacatgattcaagtaatattttgt |
9696654 |
T |
|
| Q |
238 |
ttaattagaggtcttaggtttgaa--atcctgaaaatgcaacaacgtagttataaccatcttgagaaattattttttacaattgtgtgtagaaaacacta |
335 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
9696655 |
ttaattagaggttttaggttcgaagcatcctaaaaatgcaacaacgtaattataaccatcttgagaaattaatttttacaattgtgtgtggaaaacacta |
9696754 |
T |
|
| Q |
336 |
gatatacgtcataaaataaatagtaagtttaatcatattttctattgaataattaattaatttatacggaaattcatct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
9696755 |
gatatacgtcataaaataaatagtaagtttaatcatattttctattgaataattaattaatttatacggagaatcatct |
9696833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University