View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_12 (Length: 367)
Name: NF4419_low_12
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 8437551 - 8437894
Alignment:
| Q |
19 |
atatattgccagtaaacaaaaaagataaggatatatctttcgaaaaatgaaatcagtgagacaaatccttaacnnnnnnnnnnnnnnnnnnnngtttatg |
118 |
Q |
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| T |
8437551 |
atatattgccagtaaacaaaaaagataaggatatatctttcgaaaaatgaaatcagtgagacaaatccttaactatatatctcacaaaaatatgtttatg |
8437650 |
T |
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| Q |
119 |
atcaatacaaacatgaacaagcaattgatttgattt------aataagtaacacgaactccttggtacctgagaatttcaccaatgagttcacctttccc |
212 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437651 |
atcaatacacacatgaacaagcaattgatttgatttgattttaataagtaacacgaactccttggtacctgagaatttcaccaatgagttcacctttccc |
8437750 |
T |
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| Q |
213 |
tgaaccaacatacctaccagcaatcttaccatctctaatgaacaaaaaagtaggaacctgaacaacttccatgtccctcaaaaactgcatacaactatca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437751 |
tgaaccaacatacctaccagcaatcttaccatctctaatgaacaaaaaagtaggaacctgaacaacttccatgtccctcaaaaactgcatacaactatca |
8437850 |
T |
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| Q |
313 |
ttctcatcaccattcatccttgcaaaaataacagtatcattcat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437851 |
ttctcatcaccattcatccttgcaaaaataacagtatcattcat |
8437894 |
T |
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