View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4419_low_13 (Length: 366)
Name: NF4419_low_13
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7036953 - 7036698
Alignment:
| Q |
1 |
actacttttctaaatacttactggttgtattttatttgtgtaggaaatgaacaatagtggttggaggag----------------------gatgtacaa |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
7036953 |
actacttttctaaatacttactggttgtattttatttgtgtaggaaatgaacaatagtggttggaggagtggaggatatttaggagaggaggatgtacta |
7036854 |
T |
|
| Q |
79 |
cactgactaaatcaatcaatcttttactttcatattcacttatagacattgttctctctgattatataatatattttcgtttctctttatttcgtcaaac |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036853 |
cactgactaaatcaatcaatcttttactttcatattcacttatagacatttttctctctgattatataatatattttcgtttctctttatttcgtcaaac |
7036754 |
T |
|
| Q |
179 |
tccaatgaacataaattctggttggtagtttatgcttcatattttttaaaaagtag |
234 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036753 |
tccaataaacataaattctggttggtagtttatgcttcatattttttaaaaagtag |
7036698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 7898091 - 7897920
Alignment:
| Q |
64 |
gaggaggatgtacaacactgactaaatcaatcaatcttttactttcatattcactt-atagacattgttctctctgattatataatatattttcgtttct |
162 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
7898091 |
gaggaggatgtactacactgactaaatcaatcattcttttactttcatattcactttatagacatagttctctctgattatataatatcttttcgtttct |
7897992 |
T |
|
| Q |
163 |
ctttatttcgtcaaactccaatgaacataaattctggttggtagtttatgcttcatattttttaaaaagtag |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
7897991 |
ctttatttcgtcaaactccaatgaacataaattctggtcggtagtttatacttcatattttttaaaaagtag |
7897920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 1379327 - 1379278
Alignment:
| Q |
3 |
tacttttctaaatactta-ctggttgtattttatttgtgtaggaaatgaa |
51 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
1379327 |
tacttttctaaatacttaactgtttgtattttatttgtgtaggaaatgaa |
1379278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 7039864 - 7039802
Alignment:
| Q |
164 |
tttatttcgtcaaactccaatgaacataaattctggttggtagtttatgcttcatatttttta |
226 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||||| |||||| ||| |||| ||||| |
|
|
| T |
7039864 |
tttatttcgtcaaactccaataaacatcaattatggttggtggtttatactttatatatttta |
7039802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 7313080 - 7313031
Alignment:
| Q |
3 |
tacttttctaaatactta-ctggttgtattttatttgtgtaggaaatgaa |
51 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
7313080 |
tacttttctaaatatttaactgtttgtattttatttgtgtaggaaatgaa |
7313031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 29377321 - 29377252
Alignment:
| Q |
143 |
tataatatattttcgtttctcttt-atttcgtcaaactccaatgaacataaattctggttggtagtttat |
211 |
Q |
| |
|
|||||| | |||| |||||||||| |||||||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
29377321 |
tataatttctttttgtttctcttttatttcgtcaaactctaatgaacataaattttggttggtggtttat |
29377252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 29377395 - 29377355
Alignment:
| Q |
79 |
cactgactaaatcaatcaatcttttactttcatattcactt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29377395 |
cactgactaaatcaatcaatcttttacttatatattcactt |
29377355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University