View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4419_low_14 (Length: 364)
Name: NF4419_low_14
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 11106189 - 11106534
Alignment:
| Q |
1 |
tgcaatggcatccatttaccgttacttctaatagtaaattggagccggaaaagctaagtgttgtcattaaatgcggaggagcttggacacagaagctcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11106189 |
tgcaatggcatccatttaccgttacttctaatagtaaattggagccggaaaagctaagtgttgtcattaaatgtggaggagcttggacacagaagctcta |
11106288 |
T |
|
| Q |
101 |
ccagttgctttcaaatccttcgcctataggtcgccttggaatatctgttgaaggtccttatggacctgcttcaaccaattatctaaggtctctacatctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11106289 |
ccagttgctttcaaatccttcgcctatcggtcgccttggaatatctgttgaaggtccttatggacctgcttctaccaattatctaaggtctctacatctt |
11106388 |
T |
|
| Q |
201 |
aataaattaaaaccaatttgaagtatagatataacaatgtcttttgctttgttagaaataatttcattgatttttcacatagtattttctgtttgtcttg |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11106389 |
aaaaaattaaaaccaatttgaagtatagatataacaatgtcttttgctttgttagaaataatttcattgatttttcacacagtattttctgtttgtcttg |
11106488 |
T |
|
| Q |
301 |
tatcaggcatgacacacttgtgatggtgagtggaggaagtggaatc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11106489 |
tatcaggcatgacacacttgtgatggtgagtggaggaagtggaatc |
11106534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 11119339 - 11119681
Alignment:
| Q |
1 |
tgcaatggcatccatttaccgttacttctaatagtaaattggagccggaaaagctaagtgttgtcattaaatgcggaggagcttggacacagaagctcta |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| | | |||| |||||||| | |||||||| |
|
|
| T |
11119339 |
tgcaatggcatccatttaccattacttctaatagtaaattggaatctgaaaagctaagtgttgtcattaaaagtgaaggaacttggacaaaaaagctcta |
11119438 |
T |
|
| Q |
101 |
ccagttgctttcaaatccttcgcctataggtcgccttggaatatctgttgaaggtccttatggacctgcttcaaccaattatctaaggtctctacatctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119439 |
ccagttgctttcaaatccttcgcctatcgatcgccttggaatatctgttgaaggtccttatggacctgcttcaaccaattatctaaggtctctacatctt |
11119538 |
T |
|
| Q |
201 |
aataaattaaaaccaatttgaagtatagatataacaatgtcttttgctttgttagaaataatttcattgatttttcacatagtattttctgtttg-tctt |
299 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||| |
|
|
| T |
11119539 |
aaaaaattaaaaccattttgaagtatagatataagattgtcttttgctttgttagaaataattttattgatttttcacatagtaacttatgtttgttctt |
11119638 |
T |
|
| Q |
300 |
gtatcaggcatgacacacttgtgatggtgagtggaggaagtgg |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119639 |
gtatcaggcatgacacacttgtgatggtgagtggaggaagtgg |
11119681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 11592411 - 11592753
Alignment:
| Q |
1 |
tgcaatggcatccatttaccgttacttctaatagtaaattggagccggaaaagctaagtgttgtcattaaatgcggaggagcttggacacagaagctcta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| || ||||||| |||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
11592411 |
tgcaatggcatccatttactgttacttctaacagtaaattggaaccagaaaagccaagtgttgtcattaaatgtggaggaaattggacacagaagctcta |
11592510 |
T |
|
| Q |
101 |
ccagttgctttcaaatccttcgcctataggtcgccttggaatatctgttgaaggtccttatggacctgcttcaaccaattatctaaggtctctacatctt |
200 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11592511 |
ccagttgctttcaaatcctttgcctatcggtcgccttggaatatctgttgaaggtccttatggacctgcttcaaccaattatctaaggtctctacatctt |
11592610 |
T |
|
| Q |
201 |
aataaattaaaaccaatttgaagtatagatataacaatgtcttttgctttgttagaaataatttcattgatttttcacatagtattttctgtttg-tctt |
299 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||| |||||||||||| | |||||| |||| |
|
|
| T |
11592611 |
aaaaaattaaaaccaatttgaagtatatatataagattgtcttatgctttgttagaaataatttcattgatgtttcacatagtaactgttgtttgttctt |
11592710 |
T |
|
| Q |
300 |
gtatcaggcatgacacacttgtgatggtgagtggaggaagtgg |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11592711 |
gtatcaggcatgacacacttgtgatggtgagtggaggaagtgg |
11592753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University