View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_17 (Length: 361)
Name: NF4419_low_17
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 52762157 - 52762316
Alignment:
| Q |
16 |
gcataggttctgatcgcaaaagatccattgtgggagaataataacgttaactttgcatttggattttaaaattggaatgaataagggaagaatgcatggc |
115 |
Q |
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| T |
52762157 |
gcataggttctgatcgcaaaagatccattgtgggagaataataacgttaactttgcatttggattttaaaattggaatgaataagggaagaatgcatggc |
52762256 |
T |
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| Q |
116 |
ctgaatatgctattatcaaactcaaatcatgccactacttccatcttgcggcataaaatg |
175 |
Q |
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| T |
52762257 |
ctgaatatgctattatcaaactcaaatcatgccactacttccatcttgcggcataaaatg |
52762316 |
T |
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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 52762411 - 52762492
Alignment:
| Q |
263 |
attcatagtttataaccaataattctcagatgcattttttgaaggaattaatgctcacatgcttaattcaccccacattatt |
344 |
Q |
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| T |
52762411 |
attcatagtttataaccaataattctcagatgcattttttgaaggaattaatgctcacatgcttaattcaccccacattatt |
52762492 |
T |
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