View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4419_low_19 (Length: 336)
Name: NF4419_low_19
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_19 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 122 - 336
Target Start/End: Complemental strand, 29879632 - 29879420
Alignment:
| Q |
122 |
tggggactcataaataataaggccagtatcaaaaacaagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29879632 |
tggggactcataaataataaggccagtatcaaaag-aagctccgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaa-ccgt |
29879535 |
T |
|
| Q |
222 |
aacagtactttgaagaagcaaatcttttatgtcttggataagaactgcataaacatggtatttctccacgggaccattaataagattaatgcaaacaaga |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
29879534 |
aacagtactttgaagaagcaaatcttttatgtcttggataaaaactgcataaacatggtatttctccacaggaccattaataggattaatgcaaacaaga |
29879435 |
T |
|
| Q |
322 |
gtcagaataacaaac |
336 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29879434 |
gtcagaataacaaac |
29879420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 158 - 336
Target Start/End: Original strand, 25121080 - 25121258
Alignment:
| Q |
158 |
aagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgtaacagtactttgaagaagcaaatcttttatgtcttg |
257 |
Q |
| |
|
||||| ||||||||| |||||||||| || ||||||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25121080 |
aagctccgagctttgtaaggaaatccacatattggttcc-ttctctgagagtgtgaccaaccgtaacagtactttgaagaaacaaatcttttatgtcttg |
25121178 |
T |
|
| Q |
258 |
gataagaactgcataaacatggtatttctccacgggaccattaataagattaatgcaaaca--agagtcagaataacaaac |
336 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
25121179 |
gataaggaccacataaacat-gtatttctccacgggaccattaataagattaatgcgaacaagagagtcagaataacaaac |
25121258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 126 - 336
Target Start/End: Original strand, 38065660 - 38065870
Alignment:
| Q |
126 |
gactcataaataataaggccagtatcaaaaacaagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgtaaca |
225 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||| ||| ||||||| |||||||| |||||| | | |||||||||||||||||| |||||||||| | |
|
|
| T |
38065660 |
gactcataaataacaaggccaacatcaaaag-aagattcaagctttgtaaggaaattcgcacaataggtcccttatctgagagtgtgccaaaccgtaaaa |
38065758 |
T |
|
| Q |
226 |
gtactttgaagaagcaaatcttttatgtcttggataagaactgcataaacatggtatttctccacgggaccattaataagattaatgcaaaca--agagt |
323 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| || | |||||||||||||||||||| ||||||||||||| ||| || ||| | ||||| |
|
|
| T |
38065759 |
gtactttgaagaagtaaatcttttatgtcttggataatgaccgtataaacatggtatttctcca-tggaccattaataaaattcatttaaataagagagt |
38065857 |
T |
|
| Q |
324 |
cagaataacaaac |
336 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38065858 |
cagaataacaaac |
38065870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 19109534 - 19109588
Alignment:
| Q |
268 |
gcataaacatggtatttctccacgggaccattaataagattaatgcaaacaagag |
322 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||| |||||| ||||||| ||||| |
|
|
| T |
19109534 |
gcataaacatggtatctctcaacggggccattaagaagattgatgcaaataagag |
19109588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 22192190 - 22192086
Alignment:
| Q |
158 |
aagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgtaacagtactttgaagaagcaaatcttttatgtcttg |
257 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||| |||||| |||||||| ||||||||||||| ||||| || |
|
|
| T |
22192190 |
aagcttcgagcttggcaagaaaatccgcacattggttccattctctgagagtgtgacaaactgtaacaatactttgatgaagcaaatctttcatgtcatg |
22192091 |
T |
|
| Q |
258 |
gataa |
262 |
Q |
| |
|
||||| |
|
|
| T |
22192090 |
gataa |
22192086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 321
Target Start/End: Original strand, 18888934 - 18889078
Alignment:
| Q |
177 |
gaaatccgcacattggttcccttatctgagagtgttacaaaccgtaacagtactttgaagaagcaaatcttttatgtcttggataagaactgcataaaca |
276 |
Q |
| |
|
|||||| |||| ||||||||| | ||| || || | | ||||||| | | |||||||||||||||||| |||||||| ||| ||||| | |||| ||| |
|
|
| T |
18888934 |
gaaatctgcactttggttcccatctctaagcgtatgagaaaccgtgatattactttgaagaagcaaattttttatgtattgaataagggccacatagaca |
18889033 |
T |
|
| Q |
277 |
tggtatttctccacgggaccattaataagattaatgcaaacaaga |
321 |
Q |
| |
|
||||| |||| | || |||||||| | |||||||||||||||| |
|
|
| T |
18889034 |
tggtacctctcaatggagccattaatcaaattaatgcaaacaaga |
18889078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 322
Target Start/End: Original strand, 37190293 - 37190460
Alignment:
| Q |
158 |
aagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgtaacagtactttgaagaagcaaatcttttatgtcttg |
257 |
Q |
| |
|
||||| ||||||||||||| |||||| | ||| |||| || ||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
37190293 |
aagctccgagctttgcaagaaaatccatatattacttccgttctctgagagtgtgacaaactgtaacagtactttaaagaagcaaat-ttttatgtcttg |
37190391 |
T |
|
| Q |
258 |
gataagaactgcataaacatggtatttctccacgggac----cattaataagattaatgcaaacaagag |
322 |
Q |
| |
|
|||||| | | ||||||| ||||||||||||| ||| ||||||||| ||| ||||||||||||| |
|
|
| T |
37190392 |
gataaggatcgattaaacatagtatttctccacgagaccgatcattaataaaatttatgcaaacaagag |
37190460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 26554227 - 26554111
Alignment:
| Q |
126 |
gactcataaataataaggccagtatcaaaaacaagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgtaaca |
225 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||| |||||||| ||||||||| ||| |||| ||||||| ||||||| ||| |||||| |||| | |
|
|
| T |
26554227 |
gactcataaataataaggccatcatcagaag-aagctctgagctttggaaggaaatctgcatattgattcccttctctgagaatgtgacaaactgtaaaa |
26554129 |
T |
|
| Q |
226 |
gtactttgaagaagcaaa |
243 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26554128 |
gtactttgaagaagcaaa |
26554111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 36185604 - 36185697
Alignment:
| Q |
227 |
tactttgaagaagcaaatcttttatgtcttggataagaactgcataaacatggtatttctccacgggaccattaataagattaatgcaaacaagag |
322 |
Q |
| |
|
|||||||||||||||| | |||||||| ||| | |||||| |||||||||||||| |||| ||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
36185604 |
tactttgaagaagcaattgttttatgttttgaagaagaaccgcataaacatggta--tctcaacggggccattaagaagatatatgcaaacaagag |
36185697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 31010086 - 31010174
Alignment:
| Q |
178 |
aaatccgcacattggttcccttatctgagagtgttacaaaccgtaacagtactttgaagaagcaaatcttttatgtcttggataagaac |
266 |
Q |
| |
|
||||| ||| |||| ||||||| ||||||||| | |||||| | ||| |||||||| |||| | |||||||||||||| |||||||| |
|
|
| T |
31010086 |
aaatcagcatattgattcccttctctgagagtatcacaaacaatgacattactttgatgaagaagctcttttatgtcttgtataagaac |
31010174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University