View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4419_low_21 (Length: 331)

Name: NF4419_low_21
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4419_low_21
NF4419_low_21
[»] chr3 (6 HSPs)
chr3 (18-315)||(1580940-1581260)
chr3 (102-303)||(3663662-3663863)
chr3 (100-292)||(41404076-41404267)
chr3 (21-95)||(3663886-3663959)
chr3 (26-88)||(41404302-41404364)
chr3 (176-232)||(9493734-9493790)
[»] chr1 (4 HSPs)
chr1 (18-321)||(32984329-32984655)
chr1 (100-292)||(3290523-3290715)
chr1 (133-219)||(44888160-44888246)
chr1 (18-88)||(3290415-3290484)
[»] chr7 (5 HSPs)
chr7 (23-321)||(30464360-30464681)
chr7 (18-271)||(8160824-8161088)
chr7 (100-306)||(39827475-39827681)
chr7 (22-88)||(39827716-39827782)
chr7 (130-221)||(40537781-40537872)
[»] chr2 (6 HSPs)
chr2 (121-303)||(17139792-17139973)
chr2 (122-292)||(9259451-9259617)
chr2 (193-292)||(39809383-39809482)
chr2 (18-95)||(9259665-9259742)
chr2 (96-258)||(31392321-31392483)
chr2 (22-88)||(17140029-17140095)
[»] chr6 (3 HSPs)
chr6 (122-321)||(19228337-19228534)
chr6 (18-89)||(35091963-35092034)
chr6 (100-165)||(35091865-35091930)
[»] chr5 (2 HSPs)
chr5 (155-285)||(11609545-11609675)
chr5 (181-303)||(12893096-12893218)
[»] chr8 (1 HSPs)
chr8 (114-235)||(12735392-12735515)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 1580940 - 1581260
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag--gttttgc-------------------- 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||                        
T  1580940 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagagaggttttgcaaaggttgagttgcacgttg 1581039  T
Q  96 -ttcaagtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtg 194  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581040 attcaagtgtggtggtgcataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtg 1581139  T
Q  195 ggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatggg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1581140 ggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgctcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgag 1581239  T
Q  295 caatgtccaactgggtttagt 315  Q
    ||||||||||||||| |||||    
T  1581240 caatgtccaactgggcttagt 1581260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 102 - 303
Target Start/End: Complemental strand, 3663863 - 3663662
Alignment:
Q  102 tgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtg 201  Q
    |||| ||||||  ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3663863 tgtgatggtacggaccctgcaaacaactaaagatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtg 3663764  T
Q  202 aagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtc 301  Q
    || ||||||||||||| ||||||||| |||| ||  ||||||| |||||||||||||| ||||||||||| |||||  ||| ||||||||| ||| ||||    
T  3663763 aaaatttgtcattcttttcgtgaggcaaatttgtgtgcagacgctcttgcaaacatggattgtgagcatgcgcctgatttgtgtgtgtatgagcagtgtc 3663664  T
Q  302 ca 303  Q
    ||    
T  3663663 ca 3663662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 100 - 292
Target Start/End: Complemental strand, 41404267 - 41404076
Alignment:
Q  100 agtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaag 199  Q
    ||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |    
T  41404267 agtgtggtggtgcataccctgcaaacaacttaggatggaagtgttgttggttggcgtctcattcaagaaattcgccggttgcttgctctggagtgggacg 41404168  T
Q  200 tgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 292  Q
    ||||||| ||||||||||| |||||| |||||||||  ||||||| |||| |||||||||||||||||  | |||||| ||||| ||||||||    
T  41404167 tgaagatctgtcattcttaccgtgagacgaattcgtgtgcagacgctctttcaaacatgggttgtgag-ttatgcctgtgttgcatgtgtatg 41404076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 3663959 - 3663886
Alignment:
Q  21 ggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagaggttttgc 95  Q
    |||||| ||||||| |||| || |||||||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  3663959 ggtagaggtaatgcgtatt-agtagagctttggggagcctttgatggtctccaaattgatagagagaggttttgc 3663886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 41404364 - 41404302
Alignment:
Q  26 atgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag 88  Q
    |||||| || |||||||||||| ||| | |||| ||| ||||||||||||||| |||||||||    
T  41404364 atgtaacgcgtatttagcagagattttgagagtttttaatggtctccaaattgttagagagag 41404302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 9493734 - 9493790
Alignment:
Q  176 gattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaatt 232  Q
    |||||||| ||||  |||||||||| ||||| | ||||| |||||||||||||||||    
T  9493734 gattgcttactttaaagtgggaagttaagatgtatcattattatcgtgaggcgaatt 9493790  T

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Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 32984329 - 32984655
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctaga--gagaggttttgc-------------------- 95  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||  ||||||||||||                        
T  32984329 ttgggtagatgtaatgcgtatttagcaaagctttggggagtctttgatggtctccaaattgctagacagagaggttttgcaaaggttgagttgcacgttg 32984428  T
Q  96 -ttcaagtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtg 194  Q
     ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  32984429 attcaagtgtggtggtgcataccctgcagacaactaaggatggaagtgttgttggttggtgtctcattcaagaaatttgccgattgcttgctctggagtg 32984528  T
Q  195 ggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatggg 294  Q
    ||||||| |||||| |||||||||||||||||||||||| |  ||||||| |||||| |||||||||||| |||| | | || ||||||||||||||| |    
T  32984529 ggaagtggagatttatcattcttatcgtgaggcgaattcatgtgcagacgctcttgcgaacatgggttgtaagcacgcgtctaggttgcgtgtgtatgag 32984628  T
Q  295 caatgtccaactgggtttagttctctg 321  Q
    ||||||||| || || |||||||||||    
T  32984629 caatgtccagctaggcttagttctctg 32984655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 100 - 292
Target Start/End: Original strand, 3290523 - 3290715
Alignment:
Q  100 agtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaag 199  Q
    |||||||| || | |||||| |||||||  ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |||||    
T  3290523 agtgtggttgtgcgtaccctgcagacaatcaaggatggaagtgttgttggttggcgtctcattcaagaatttcgtcaattgcttgctttggagttggaag 3290622  T
Q  200 tgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 292  Q
    |||| |||||||||||| |||||||||||||||| |  ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  3290623 tgaaaatttgtcattctaatcgtgaggcgaattcttgtgcagacgctcatgcaaacatgggttgtgagcatgcgcctgggttgcgtgtgtatg 3290715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 44888160 - 44888246
Alignment:
Q  133 gatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttat 219  Q
    |||||||| ||||||||||  |||||||| ||||||||| | | |||| ||||||||||| | |||||||||||||||| |||||||    
T  44888160 gatggaagcgttgttggtttccgtctcatccaagaaatttgtctattgtttgctttggagcgagaagtgaagatttgtctttcttat 44888246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 3290415 - 3290484
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag 88  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||||| ||||  |||||||||||||||    
T  3290415 ttgggtagatgtaatgtgtatttagcagagcttt-gagagtctttgatgatctctgaattgctagagagag 3290484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 321
Target Start/End: Complemental strand, 30464681 - 30464360
Alignment:
Q  23 tagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag--gttttgc---------------------ttca 99  Q
    |||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||  |||||||                     ||||    
T  30464681 tagatgtaatgcgtatttagcaaagctttggggagtcttggatggtctccaaattgctagagagagaggttttgcaaaagttgagttgcacgttaattca 30464582  T
Q  100 agtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaag 199  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||  |||||||||| ||||||||||||    
T  30464581 agtgtggtggtgcataccctgcagacaactaagaatggaagtgttgttggttggcgtctcattgaagaaattcgcatattgcttgctctggagtgggaag 30464482  T
Q  200 tgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatg 299  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||| |||||||||| ||||||||||||||| | | |||||||||||||||| | | ||    
T  30464481 tgaagatttgtcattcttatcatgaggcgaattcgtgtgcagacgctcttgcaaacttgggttgtgagcatgcgtcggggttgcgtgtgtatgagtagtg 30464382  T
Q  300 tccaactgggtttagttctctg 321  Q
    |||| || || ||| |||||||    
T  30464381 tccagctaggcttatttctctg 30464360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 8161088 - 8160824
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagaggttttgc---------------------t 96  Q
    ||||||||||||||||| ||||||||||| |||| | ||||||| |||| |||||||||| |||||||||||||||||                     |    
T  8161088 ttgggtagatgtaatgcgtatttagcagaactttggagagtcttggatgatctccaaatttctagagagaggttttgcaaaagttgagttgcaagttgat 8160989  T
Q  97 tcaagtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtggg 196  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||||||          |||||||||||||||||| |||||||||||||||||||||    
T  8160988 tcaagtgtggtggtgcataccctgcagacaactaaggatagaagtgttgt----------ctcattcaagaaattcgctgattgcttgctttggagtggg 8160899  T
Q  197 aagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatg 271  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||| |||||||||||||| |||||||||||    
T  8160898 aagtgaagatttgtcattcttatcgtgaagcgaattcgtgtgcagacgctcttgcaaacatggattgtgagcatg 8160824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 100 - 306
Target Start/End: Complemental strand, 39827681 - 39827475
Alignment:
Q  100 agtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaag 199  Q
    ||||||||||| |||| | | || ||||||||||||||| |||||| ||||||||||||||||||||||||||  ||| || ||||| | |||||||| |    
T  39827681 agtgtggtggtgcatagcttgcaaacaactaaggatggaggtgttgctggttggcgtctcattcaagaaattcctcgactgtttgctctagagtgggacg 39827582  T
Q  200 tgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatg 299  Q
    |||| |||||||||||||||||||| ||||||| ||  || |||| ||||||||||||  ||||||||||||  ||||||||||||||||||| ||| ||    
T  39827581 tgaaaatttgtcattcttatcgtgaagcgaatttgtgtgcggacgctcttgcaaacatttgttgtgagcatgctcctgggttgcgtgtgtatgagcagtg 39827482  T
Q  300 tccaact 306  Q
    || ||||    
T  39827481 tcaaact 39827475  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 39827782 - 39827716
Alignment:
Q  22 gtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag 88  Q
    ||||||||||||||||| ||||||||||||  || ||||||||||||||||||||||||||||||||    
T  39827782 gtagatgtaatgcatatctagcagagctttgaggtgtctttgatggtctccaaattgctagagagag 39827716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 40537872 - 40537781
Alignment:
Q  130 aaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcg 221  Q
    |||||||||||| ||||||||||| | ||||| ||| |||||||  ||||| | |||||||||||| || | ||  | ||||||||||||||    
T  40537872 aaggatggaagtcttgttggttggtgactcatccaaaaaattcgtagattgttagctttggagtggaaaattaaagtgtgtcattcttatcg 40537781  T

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Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 121 - 303
Target Start/End: Complemental strand, 17139973 - 17139792
Alignment:
Q  121 cagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatc 220  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  17139973 cagacaactaaggatggaagtgtt-ttggttggcgtctaattcaataaattcgccgattgctttctttgaagtgggaagtgaagatttgtcattcttatc 17139875  T
Q  221 gtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtcca 303  Q
    |||||| ||||||||  ||||||  ||||||||||||||  ||||||||||  ||||||||||||||||||| ||| ||||||    
T  17139874 gtgaggtgaattcgtgtgcagacactcttgcaaacatggactgtgagcatgcacctgggttgcgtgtgtatgagcagtgtcca 17139792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 122 - 292
Target Start/End: Complemental strand, 9259617 - 9259451
Alignment:
Q  122 agacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||||||      
T  9259617 agacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccga----gtgctttggagtggggagtgaagatttgtcattcttatta 9259522  T
Q  222 tgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 292  Q
    || |||||||| ||  | ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  9259521 tggggcgaatttgtgtgtagacgctcttgcaaacatgggttatgagcatgcgcctgagttgcgtgtgtatg 9259451  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 292
Target Start/End: Original strand, 39809383 - 39809482
Alignment:
Q  193 tgggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 292  Q
    ||||||||||| | |||||||||||||||||| ||||||||||  ||||||  ||||||||||||||||||||||||||  ||| |||||||||||||||    
T  39809383 tgggaagtgaaaaattgtcattcttatcgtgaagcgaattcgtgtgcagacactcttgcaaacatgggttgtgagcatgctcctaggttgcgtgtgtatg 39809482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 9259742 - 9259665
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagaggttttgc 95  Q
    ||||||||||||||||||||||||  |||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  9259742 ttgggtagatgtaatgcatatttaaaagagctttggggagtcattgatggtctccgaattgctagagagaggttttgc 9259665  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 258
Target Start/End: Original strand, 31392321 - 31392483
Alignment:
Q  96 ttcaagtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgc-tttggagtg 194  Q
    ||||||||| ||||| |  ||||| |||| |||||||||||||||| ||||||||||| ||||||||||||  ||||  ||||||||||| ||||||||     
T  31392321 ttcaagtgtagtggtgcggaccctgcagataactaaggatggaagtattgttggttggtgtctcattcaag-gattcatcgattgcttgcttttggagta 31392419  T
Q  195 ggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatg 258  Q
    |||||||||||||| || || |||| |||| |||||||  |  ||| ||| |||||||||||||    
T  31392420 ggaagtgaagatttttcctttttattgtgatgcgaatttttgtgcatacgctcttgcaaacatg 31392483  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 17140095 - 17140029
Alignment:
Q  22 gtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagag 88  Q
    ||||||||||||| |||||| |||| ||||  |||||||||||||||||||||||||||||||||||    
T  17140095 gtagatgtaatgcgtatttatcagaactttgtggagtctttgatggtctccaaattgctagagagag 17140029  T

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Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 122 - 321
Target Start/End: Original strand, 19228337 - 19228534
Alignment:
Q  122 agacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcg 221  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  19228337 agacaactaaggatgaaagtgatgttggttggcgtctcattcaagaaattcaccgattgcttgc-ttggagtgggaagtgaaga-ttgtcattcttatcg 19228434  T
Q  222 tgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctg 321  Q
    | |||| |||||||  | ||||  | || ||||||| ||||||||||||| | | |||||||||||||||| ||||||||||||| || |||||||||||    
T  19228435 taaggcaaattcgtgtgtagacacttttccaaacataggttgtgagcatgcgacggggttgcgtgtgtatgagcaatgtccaactaggcttagttctctg 19228534  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 35092034 - 35091963
Alignment:
Q  18 ttgggtagatgtaatgcatatttagcagagctttagggagtctttgatggtctccaaattgctagagagagg 89  Q
    |||||||||||||||   ||||||||| |||||| |||||||||||||||||| | ||||||||||||||||    
T  35092034 ttgggtagatgtaatatgtatttagcatagctttggggagtctttgatggtcttcgaattgctagagagagg 35091963  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 35091930 - 35091865
Alignment:
Q  100 agtgtggtggtacataccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaa 165  Q
    |||||||||||   |||||| || ||||||||||||||||||||||||||||| ||||||| ||||    
T  35091930 agtgtggtggtgtgtaccctgcacacaactaaggatggaagtgttgttggttgacgtctcaatcaa 35091865  T

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Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 11609675 - 11609545
Alignment:
Q  155 gtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaa 254  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  11609675 gtctcatttaagaaatttgccgattgcttgctttggagtgagaagtgaaaatttgtcattcttatcgtgaggcgaattcgtgtgcagacgctcttgcaaa 11609576  T
Q  255 catgggttgtgagcatgtgcctgggttgcgt 285  Q
    |||||||||| ||||| ||| ||||||||||    
T  11609575 catgggttgttagcatatgcatgggttgcgt 11609545  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 12893218 - 12893096
Alignment:
Q  181 cttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggt 280  Q
    |||||||||||||| ||||||||||||||||||||||||||||   | |||||||   |||||  | ||||||||||||||||| ||||||  |||| ||    
T  12893218 cttgctttggagtgagaagtgaagatttgtcattcttatcgtgtaccaaattcgtgtacagacacttttgcaaacatgggttgtaagcatgcacctgagt 12893119  T
Q  281 tgcgtgtgtatgggcaatgtcca 303  Q
    |||||||||||| ||| ||||||    
T  12893118 tgcgtgtgtatgagcagtgtcca 12893096  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 12735515 - 12735392
Alignment:
Q  114 taccctacagacaactaaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatt--tgtc 211  Q
    ||||||||| |||||||| |||| ||||||||||||||| |||||||||||| |||| || ||||| ||||||||| | |||||||| ||||||  |||     
T  12735515 taccctacaaacaactaaagatgaaagtgttgttggttgacgtctcattcaaaaaatccgtcgattacttgctttgcactgggaagttaagatttgtgtt 12735416  T
Q  212 attcttatcgtgaggcgaattcgt 235  Q
    ||||||||||| |||||| |||||    
T  12735415 attcttatcgtaaggcgagttcgt 12735392  T

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