View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4419_low_22 (Length: 314)

Name: NF4419_low_22
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4419_low_22
NF4419_low_22
[»] chr1 (6 HSPs)
chr1 (1-131)||(7037121-7037251)
chr1 (237-314)||(7036933-7037012)
chr1 (131-190)||(7036999-7037058)
chr1 (188-236)||(7036907-7036955)
chr1 (186-236)||(1379282-1379333)
chr1 (186-236)||(7313035-7313086)
[»] chr5 (1 HSPs)
chr5 (134-185)||(29377565-29377616)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 7037251 - 7037121
Alignment:
Q  1 atatgaaagtagtagttatatactatcgaagttcataaaatatcaatgtcccagcggatgaagctatcaactgttacatgtcacaatttgagtgttatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7037251 atatgaaagtagtagttatatactatcgaagttcataaaatatcaatgtcccagtggatgaagctatcaactgttacatgtcacaatttgagtgttatac 7037152  T
Q  101 acacatacacatatatttcataattcttttc 131  Q
    ||||||||||||||||||||||| |||||||    
T  7037151 acacatacacatatatttcataaatcttttc 7037121  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 7037012 - 7036933
Alignment:
Q  237 attatattaaattatgaatgatttgaaattgctct--tctcatttgacttagcttagttactacttttctaaatacttac 314  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  7037012 attatattaaattatgaatgatttgaaattgctctattctcatttgacttagcttagttactacttttctaaatacttac 7036933  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 7037058 - 7036999
Alignment:
Q  131 cgataactagatagaaatgaatgtattaaaagatgcatgaactgtgattatattaaatta 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7037058 cgataactagatagaaatgaatgtattaaaagatgcatgaactgtgattatattaaatta 7036999  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 7036955 - 7036907
Alignment:
Q  188 ttactacttttctaaatacttactgtttgtattttatttgtgtaggaaa 236  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7036955 ttactacttttctaaatacttactggttgtattttatttgtgtaggaaa 7036907  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 1379333 - 1379282
Alignment:
Q  186 aattactacttttctaaatactta-ctgtttgtattttatttgtgtaggaaa 236  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  1379333 aattattacttttctaaatacttaactgtttgtattttatttgtgtaggaaa 1379282  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 7313086 - 7313035
Alignment:
Q  186 aattactacttttctaaatactta-ctgtttgtattttatttgtgtaggaaa 236  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  7313086 aattattacttttctaaatatttaactgtttgtattttatttgtgtaggaaa 7313035  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 29377616 - 29377565
Alignment:
Q  134 taactagatagaaatgaatgtattaaaagatgcatgaactgtgattatatta 185  Q
    |||||||||||||| |||||||| |||| ||| ||||| |||||||||||||    
T  29377616 taactagatagaaaggaatgtatgaaaatatgtatgaattgtgattatatta 29377565  T

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