View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4419_low_25 (Length: 299)

Name: NF4419_low_25
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4419_low_25
NF4419_low_25
[»] chr5 (21 HSPs)
chr5 (18-299)||(10559112-10559393)
chr5 (142-299)||(10740541-10740698)
chr5 (143-299)||(10652045-10652201)
chr5 (142-299)||(10659927-10660084)
chr5 (143-295)||(10588273-10588425)
chr5 (144-299)||(19605709-19605864)
chr5 (142-299)||(7193215-7193372)
chr5 (142-299)||(10762975-10763132)
chr5 (141-295)||(9825298-9825445)
chr5 (140-299)||(10604962-10605121)
chr5 (219-299)||(10565237-10565317)
chr5 (140-295)||(10611924-10612079)
chr5 (81-245)||(9849760-9849928)
chr5 (219-299)||(10746934-10747014)
chr5 (220-299)||(10716860-10716939)
chr5 (230-299)||(10216679-10216748)
chr5 (142-191)||(10746869-10746918)
chr5 (142-293)||(9836170-9836321)
chr5 (219-299)||(11048576-11048656)
chr5 (143-189)||(10551101-10551147)
chr5 (219-255)||(10581250-10581286)
[»] chr6 (5 HSPs)
chr6 (140-295)||(12899784-12899939)
chr6 (140-299)||(12958288-12958447)
chr6 (219-299)||(12932489-12932569)
chr6 (219-299)||(12948854-12948934)
chr6 (219-299)||(12907400-12907480)
[»] scaffold0692 (1 HSPs)
scaffold0692 (219-299)||(7503-7583)
[»] chr2 (1 HSPs)
chr2 (219-299)||(17923322-17923402)
[»] chr1 (3 HSPs)
chr1 (226-295)||(39875818-39875887)
chr1 (226-295)||(39883941-39884010)
chr1 (226-295)||(39890895-39890964)
[»] chr8 (1 HSPs)
chr8 (143-191)||(27723899-27723947)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 10559393 - 10559112
Alignment:
Q  18 cagaacccattccatactctaaaaaatatatagcaaaacattgttaaaattgtgtaacaggtaaagtacaaagtctacaacaaaagataggaaaattcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559393 cagaacccattccatactctaaaaaatatatagcaaaacattgttaaaattgtgtaacaggtaaagtacaaagtctacaacaaaagataggaaaattcaa 10559294  T
Q  118 aagaaacacaaaatattttattacatacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  10559293 aagaaacacaaaatattttattacatacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatataccgtccgcag 10559194  T
Q  218 atgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559193 atgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 10559112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 10740541 - 10740698
Alignment:
Q  142 atacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgccaa 241  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||  ||||  ||  ||| |  | |||||| ||||||||||||||||    
T  10740541 atacctggaggagcatagccaacagttccttttattccaattgtactagtttccttgtgagaggtatcgtcaatggctgagacaagtcttgctatgccaa 10740640  T
Q  242 aatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  10740641 aatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatc 10740698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 143 - 299
Target Start/End: Original strand, 10652045 - 10652201
Alignment:
Q  143 tacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgccaaa 242  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||   |||  ||  ||| |  | |||||| |||||||||||||||||    
T  10652045 tacctggaggagcatagccaacagtccctttaattccaattgtactagtttccttgttagaggtattgtcaatggctgagacaagtcttgctatgccaaa 10652144  T
Q  243 atcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    ||||||||||||||||||  |||| ||||||| ||||||||| ||||||||||||||    
T  10652145 atcactcacatgagcaaccatgtcgtcatcaagaaggacattacttggctttagatc 10652201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 10659927 - 10660084
Alignment:
Q  142 atacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgccaa 241  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||  ||||||  ||||  ||  ||| |  | |||||| ||||||||||||||||    
T  10659927 atacctggaggagcatagccaacagtccctttaattccaattgtactaaattccttgtgagaggtatcgtcaatggctgagacaagtcttgctatgccaa 10660026  T
Q  242 aatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||||||||||||||||  |||| || |||| ||||||||| ||||||||||||||    
T  10660027 aatcactcacatgagcaaccatgtcatcgtcaagaaggacattacttggctttagatc 10660084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 295
Target Start/End: Original strand, 10588273 - 10588425
Alignment:
Q  143 tacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgccaaa 242  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | ||||| |    || | |  |||||| |||||||||||||||||    
T  10588273 tacctggaggagcatagccaacagtccctttaattccaattgtactagtttcctgatgagatgtgtcttcaataactgagacaagtcttgctatgccaaa 10588372  T
Q  243 atcactcacatgagcaacattgtcttcatcaataaggacattgcttggcttta 295  Q
    ||||||||||||||||||  |||| || |||| |||||| |||||||||||||    
T  10588373 atcactcacatgagcaaccatgtcatcgtcaagaaggacgttgcttggcttta 10588425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 299
Target Start/End: Original strand, 19605709 - 19605864
Alignment:
Q  144 acctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgccaaaa 243  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||| | |  |||  ||  |||  |||| || || ||||||||||||||||||    
T  19605709 acctggaggagcatagccaatggtcccttttattccaattgtgctagtttcttgacaagagttattgtcagcagaagatacaagtcttgctatgccaaaa 19605808  T
Q  244 tcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    ||||||||||| |||||  | || || |||||||||||||||||||||||||||||    
T  19605809 tcactcacatgtgcaacgatatcgtcgtcaataaggacattgcttggctttagatc 19605864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 7193372 - 7193215
Alignment:
Q  142 atacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgccaa 241  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| ||||||||   | ||||  |   ||| | |  |||||| ||||||||||||||||    
T  7193372 atacctggaggagcatagccaatagtccctttaattccaattgtactagtttctcgatgagaggtgtcgtcaataactgagacaagtcttgctatgccaa 7193273  T
Q  242 aatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||||||||||||||||  |||| || |||| ||||||||||||||||||||||||    
T  7193272 aatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggctttagatc 7193215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 10762975 - 10763132
Alignment:
Q  142 atacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgccaa 241  Q
    |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||  |||   | |  | |   || ||||||||||| ||||    
T  10762975 atacctggaggagcatagccaacagttccttttattccagttgtactagtttccttaagagaggtacaagcaatggcttgaactagtcttgctattccaa 10763074  T
Q  242 aatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  10763075 aatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatc 10763132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 141 - 295
Target Start/End: Complemental strand, 9825445 - 9825298
Alignment:
Q  141 catacctggaggagcatagccaacagtcccttttattccaattgtgctagtttcctt--aggagatatacggtccacagatgagacgagtcttgctatgc 238  Q
    ||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||  |||||||         ||||||||||| |||||||| ||||    
T  9825445 catacatggaggagcatatccaacagtcccttttagtccaattgtgctagtttccttggaggagat---------acagatgagacaagtcttgcaatgc 9825355  T
Q  239 caaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggcttta 295  Q
    ||||||||||| | |||| |||| | |||||||||| ||||| ||| ||||||||||    
T  9825354 caaaatcactcgcctgagaaacaatatcttcatcaacaaggatattacttggcttta 9825298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 10605121 - 10604962
Alignment:
Q  140 acatacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgcc 239  Q
    ||||||||||||||||||| |||||||| |||||||| |||||||| ||||| |   || ||||  |||   | |  || ||||| ||||||||||||||    
T  10605121 acatacctggaggagcatatccaacagttccttttatcccaattgtactagtatttatatgagaggtaccaccaatggacgagaccagtcttgctatgcc 10605022  T
Q  240 aaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||||||||||||||||||  | || |||||||  |||||||||||||||||||||||    
T  10605021 aaaatcactcacatgagcaaccatatcatcatcaagtaggacattgcttggctttagatc 10604962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 10565317 - 10565237
Alignment:
Q  219 tgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| || |||| ||||| ||||||||||||||||||    
T  10565317 tgagacgagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggatattgcttggctttagatc 10565237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 295
Target Start/End: Complemental strand, 10612079 - 10611924
Alignment:
Q  140 acatacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgcc 239  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||| | |||| ||||   ||   | |  |  ||||| ||||||||||||||    
T  10612079 acatacctggaggagcatagccaacagtccctttaattccaattgtcttagtattcttatgagaggaaccaccaatggccgagacaagtcttgctatgcc 10611980  T
Q  240 aaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggcttta 295  Q
    ||||||||||||||| |||||  | || |||||||  |||||||||||||||||||    
T  10611979 aaaatcactcacatgtgcaaccatatcatcatcaagtaggacattgcttggcttta 10611924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 9849760 - 9849928
Alignment:
Q  81 aagtacaaagtctacaacaaaagataggaaaattcaaaagaaacacaaaa--tattttattacatacct---ggaggagcatagccaacagtccctttta 175  Q
    ||||| ||| |||||||  |||||||||| || ||||| ||||||| |||  ||||| || ||||||||   ||||||||||| ||||||||||||||||    
T  9849760 aagtataaaatctacaatgaaagataggagaactcaaa-gaaacactaaaattatttaataacataccttgaggaggagcatatccaacagtccctttta 9849858  T
Q  176 ttccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgccaaaatc 245  Q
    ||||||||||  ||||||||||   | | | || ||||  |||||||||||||||||| |||||||||||    
T  9849859 ttccaattgttttagtttccttgaaaaagacaccgtccctagatgagacgagtcttgcaatgccaaaatc 9849928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 10746934 - 10747014
Alignment:
Q  219 tgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||| ||| ||||||||||||||||| |||||||||||||  |||| ||||||| |||||||||||||||||| |||||    
T  10746934 tgagacaagttttgctatgccaaaatcagtcacatgagcaaccatgtcatcatcaagaaggacattgcttggcttgagatc 10747014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 10716860 - 10716939
Alignment:
Q  220 gagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    ||||| ||| ||||||||||||||||| |||||||||||||  |||| ||||||| |||||||||||||||||| |||||    
T  10716860 gagacaagttttgctatgccaaaatcagtcacatgagcaaccatgtcatcatcaagaaggacattgcttggcttaagatc 10716939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 10216679 - 10216748
Alignment:
Q  230 ttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||||||||||||||||||||||||||||  |||| ||||  | ||| ||||||||||||||||||||    
T  10216679 ttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatc 10216748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 10746869 - 10746918
Alignment:
Q  142 atacctggaggagcatagccaacagtcccttttattccaattgtgctagt 191  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  10746869 atacctggaggagcatagccaacagttccttttattccaattgtactagt 10746918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 293
Target Start/End: Original strand, 9836170 - 9836321
Alignment:
Q  142 atacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgccaa 241  Q
    |||||||| |||||||||||||  ||||||  ||||  | |||| |||||||||||| ||||  ||| ||| |  | |||||  ||||||||||||||||    
T  9836170 atacctgggggagcatagccaatggtccctgatattgtagttgtactagtttccttatgagaggtaccgtcaatggctgagataagtcttgctatgccaa 9836269  T
Q  242 aatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctt 293  Q
    |||||||||| ||||||||  |||  ||||| | |||||  |||||||||||    
T  9836270 aatcactcacgtgagcaaccatgttatcatcgagaaggatgttgcttggctt 9836321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 11048576 - 11048656
Alignment:
Q  219 tgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||| ||| |||| ||||||||||||||||||||||||||  |||| || | || ||| ||||| ||||||||||||||    
T  11048576 tgagacaagttttgcaatgccaaaatcactcacatgagcaaccatgtcgtcgttaagaagaacattacttggctttagatc 11048656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 10551147 - 10551101
Alignment:
Q  143 tacctggaggagcatagccaacagtcccttttattccaattgtgcta 189  Q
    |||||||||| ||||||||||  ||||| ||||||||||||||||||    
T  10551147 tacctggaggtgcatagccaattgtcccctttattccaattgtgcta 10551101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 10581286 - 10581250
Alignment:
Q  219 tgagacgagtcttgctatgccaaaatcactcacatga 255  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  10581286 tgagacaagtcttgctgtgccaaaatcactcacatga 10581250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 295
Target Start/End: Complemental strand, 12899939 - 12899784
Alignment:
Q  140 acatacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgcc 239  Q
    ||||||| ||||||||||| ||||| || ||||||||||||||||||||||| | |||| ||||  |||     |  | |||||| ||||||||||||||    
T  12899939 acatacccggaggagcataaccaactgttccttttattccaattgtgctagtattcttatgagaggtaccagaaattgttgagacaagtcttgctatgcc 12899840  T
Q  240 aaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggcttta 295  Q
    |||||||||||||||||||||  |||| ||||||| ||||||||||||||||||||    
T  12899839 aaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggcttta 12899784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 12958447 - 12958288
Alignment:
Q  140 acatacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatatacggtccacagatgagacgagtcttgctatgcc 239  Q
    ||||||| ||||||||||| ||||| || ||||||||||||||||||||||| | ||||  |||  ||| |   |  | |||||| ||||||||||| ||    
T  12958447 acatacccggaggagcataaccaactgttccttttattccaattgtgctagtattcttattagaggtaccggaaatggttgagacaagtcttgctattcc 12958348  T
Q  240 aaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||||||||||||||||||  ||||  |||||| ||||||||||||||||||||||||    
T  12958347 aaaatcactcacatgagcaaccatgtcaccatcaagaaggacattgcttggctttagatc 12958288  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 12932569 - 12932489
Alignment:
Q  219 tgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||||||||||| ||||||||    
T  12932569 tgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatc 12932489  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 12948934 - 12948854
Alignment:
Q  219 tgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||||||||||| ||||||||    
T  12948934 tgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatc 12948854  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 12907480 - 12907400
Alignment:
Q  219 tgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||| ||||||||||||||||||||||||| |||||||||  |||| ||||||| ||||||||||||||| ||||||||    
T  12907480 tgagacaagtcttgctatgccaaaatcactcaaatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatc 12907400  T

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Target: scaffold0692 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 7583 - 7503
Alignment:
Q  219 tgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  7583 tgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatc 7503  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 17923322 - 17923402
Alignment:
Q  219 tgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatc 299  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||||||||||| ||||||||    
T  17923322 tgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatc 17923402  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 39875818 - 39875887
Alignment:
Q  226 agtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggcttta 295  Q
    ||||| |||| ||||||||||||||||||||||||  |||| || |||| ||||||||||||||| ||||    
T  39875818 agtctggctaagccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggtttta 39875887  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 39883941 - 39884010
Alignment:
Q  226 agtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggcttta 295  Q
    ||||| |||| ||||||||||||||||||||||||  |||| || |||| ||||||||||||||| ||||    
T  39883941 agtctggctaagccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggtttta 39884010  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 39890895 - 39890964
Alignment:
Q  226 agtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggcttta 295  Q
    ||||| |||| ||||||||||||||||||||||||  |||| || |||| ||||||||||||||| ||||    
T  39890895 agtctggctaagccaaaatcactcacatgagcaaccatgtcatcttcaagaaggacattgcttggtttta 39890964  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 27723899 - 27723947
Alignment:
Q  143 tacctggaggagcatagccaacagtcccttttattccaattgtgctagt 191  Q
    |||||||||||||||| |||| ||| || || |||||||||||||||||    
T  27723899 tacctggaggagcatatccaatagttcccttaattccaattgtgctagt 27723947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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