View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_27 (Length: 259)
Name: NF4419_low_27
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 39491498 - 39491254
Alignment:
| Q |
1 |
cctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttgag |
100 |
Q |
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| T |
39491498 |
cctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttgag |
39491399 |
T |
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| Q |
101 |
ttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctt |
200 |
Q |
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| T |
39491398 |
ttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctt |
39491299 |
T |
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| Q |
201 |
tcaaaaactcttttggtaattcataagcagcatcctttgtttcat |
245 |
Q |
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| T |
39491298 |
tcaaaaactcttttggtaattcataagcagcatcctttgtttcat |
39491254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 39287537 - 39287781
Alignment:
| Q |
1 |
cctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttgag |
100 |
Q |
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| T |
39287537 |
cctaaacacattctcaataagcattgcatttgttggttgatcaagccaagaaggccagcaaataacaggcacaccagttatcaatgtctcaagtgttgag |
39287636 |
T |
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| Q |
101 |
ttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctt |
200 |
Q |
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| T |
39287637 |
ttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctt |
39287736 |
T |
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| Q |
201 |
tcaaaaactcttttggtaattcataagcagcatcctttgtttcat |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39287737 |
tcaaaaactcttttggtaattcataagcagcatcctttgtttcat |
39287781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 5905995 - 5906115
Alignment:
| Q |
102 |
tccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctcttt |
201 |
Q |
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|||||||||||||| | ||||||||| || |||||||| |||| |||||||| || ||||||| | |||||||||||||| |||| || |||| |
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| T |
5905995 |
tccaaccacaatgagacaaaaaacaagccactgcagggtggcttaaaaccttctcttgattacaccatgttacaaccaaacctcttccttttgtttcttc |
5906094 |
T |
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| Q |
202 |
caaaaactcttttggtaattc |
222 |
Q |
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||||||| ||||||| ||||| |
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| T |
5906095 |
caaaaacccttttggaaattc |
5906115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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