View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_3 (Length: 577)
Name: NF4419_low_3
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 9 - 559
Target Start/End: Original strand, 43805995 - 43806545
Alignment:
| Q |
9 |
agcagagaggataagtttagaaaggcctttagacataccaccaaatacccacttgtgtgaagttgcgttcgagtgaaggaacaagggatggacatgaaga |
108 |
Q |
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| T |
43805995 |
agcagacaggataagtttagaaaggcctttagacataccaccaaatacccacttgtgtgaagttgcgttcgagtgaaggaacaagggatggacatgaaga |
43806094 |
T |
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| Q |
109 |
tagttttttgcatctgcagttcattttaaaaataaatacgcattatcaagccagaaagtcaaacaccatttgaactacatgccacaagctacaagccaca |
208 |
Q |
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| T |
43806095 |
tagttttttgcacctgcagttcattttaaaaataaatacgcattatcaagccagaaagtcaaacaccatttgaactacatgccacaagctacaagccaca |
43806194 |
T |
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| Q |
209 |
agcttaacacatagtatgtgagatctgaaaaataaattaatcgctatgacaatcaaatggaaaataagttgtaagtaatcatcattctatgaatataacc |
308 |
Q |
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| T |
43806195 |
agcttaacacatagtatgtgagatctgaaaaataaattaatcgctatgacaatcaaatggaaaataagttgtaagtaatcatcattctatgaatataacc |
43806294 |
T |
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| Q |
309 |
tagattaacagagcattggcagggttacataacaaccatggaacatagcagtagttaaatatatttatttgagaaacttaatattggattacattgtgag |
408 |
Q |
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| T |
43806295 |
tagattaacagagcattggcagggttacataacaaccatggaacatagcagtagttaaatatatttatttgagaaacttaatattggattacattgtgag |
43806394 |
T |
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| Q |
409 |
ctgacttttgaaccaagtctgttatcatagtttcctgctttccaaaactttctacatagcggtgctgcagaaattggttgtggactggaaaggctaatgt |
508 |
Q |
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| T |
43806395 |
ctgacttttgaaccaagtctgttatcatagtttcctgctttccaaaactttctacatagcggtgctgcagaaattggttgtggactggaaaggctaatgt |
43806494 |
T |
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| Q |
509 |
catccaccgacaaaaatcctgattccgatgcacatgtaacactgcgacaag |
559 |
Q |
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| T |
43806495 |
catccactgacaaaaatcctgattccgatgcacatgtaacactgcgacaag |
43806545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 34845542 - 34845627
Alignment:
| Q |
41 |
acataccaccaaatacccacttgtgtgaagttgcgttcgagtgaaggaacaagggatggacatgaagatagttttttgcatctgca |
126 |
Q |
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| T |
34845542 |
acataccaccaaatgcccacttgtgggaagttgcatttgagtgaaggaacatggggtgtacatgtagatagtttttcccatctgca |
34845627 |
T |
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