View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_33 (Length: 249)
Name: NF4419_low_33
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_33 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 923737 - 923633
Alignment:
| Q |
144 |
tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag |
243 |
Q |
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| T |
923737 |
tgcattcatttctaaactctaaaaagacactatttttctatctaaactcttaaagaaatctaaaaagacaccatttttcaatccaaactctt-aaagaag |
923639 |
T |
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| Q |
244 |
aaaaac |
249 |
Q |
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|||||| |
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| T |
923638 |
aaaaac |
923633 |
T |
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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 22996517 - 22996457
Alignment:
| Q |
11 |
atgaaatagagctaactgttgatgtgtaagttattaataatgaataaatccaaataacttatt |
73 |
Q |
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| T |
22996517 |
atgaaatagagctatctattgatgt--aagttattaataatgaataaatccaaataacttatt |
22996457 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 46833160 - 46833209
Alignment:
| Q |
144 |
tgcattcatttctaaactctaagaagacaccatttttctatctaaactct |
193 |
Q |
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| T |
46833160 |
tgcattcatttttaaactctaaaaagacaccatttttttatctaaactct |
46833209 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 27540883 - 27540938
Alignment:
| Q |
144 |
tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa |
200 |
Q |
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| T |
27540883 |
tgcattcatttataagctataa-aagacaccatttttctatctaaactcttaaagaa |
27540938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 45032186 - 45032127
Alignment:
| Q |
141 |
agttgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa |
200 |
Q |
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| T |
45032186 |
agttgcatacatttataaactcttaaaagacacaattttactatctacactcttaaagaa |
45032127 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 4357264 - 4357204
Alignment:
| Q |
139 |
tcagttgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa |
200 |
Q |
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| T |
4357264 |
tcagctgcattcatttccaaactctta-aagacacattttttatatctaaactcttaaagaa |
4357204 |
T |
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