View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_39 (Length: 235)
Name: NF4419_low_39
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 7095844 - 7095631
Alignment:
| Q |
1 |
tgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaattcctaaaatattctaacat |
100 |
Q |
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| T |
7095844 |
tgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaattcctaaaatattctaacat |
7095745 |
T |
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| Q |
101 |
atatttcttgatttcattttcaatttattgattcgacagtccagattctgtgtatagtgttgttgaacatgaacatttacactgactgtttatctttcta |
200 |
Q |
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| T |
7095744 |
atattttttgatttcattttcaatttattgattcaacagtccagattctgtgtatagtgttgttga------acatttacactgactgtttatttttcta |
7095651 |
T |
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| Q |
201 |
ttctttgactgacattatac |
220 |
Q |
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| T |
7095650 |
ttttttgactgacattatac |
7095631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 7105547 - 7105461
Alignment:
| Q |
128 |
ttgattcgacagtccagattctgtgtatagtgttgttgaacatgaacatttacactgactgtttatctttctattctttgactgacattatac |
220 |
Q |
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| T |
7105547 |
ttgattcaacagtccagattctgtgtatagtgttgttgaacat------ttacactgactgtttatttttctattctttgactgacattatac |
7105461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 7585252 - 7585350
Alignment:
| Q |
17 |
cagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaattcctaaaatattctaacatatatttcttgatttca |
116 |
Q |
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| T |
7585252 |
cagatgatcattatcgtgtctctacttccattgatgctgaaattgatatggtatggatctccaattcct--aatactttaacatagatttcttgatttca |
7585349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30680567 - 30680642
Alignment:
| Q |
1 |
tgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatct |
76 |
Q |
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| T |
30680567 |
tgtcaaccttatgggtcagattatcgttatcgcatctccacttccgttgatgctggtattgatatggtatagatct |
30680642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 30056637 - 30056578
Alignment:
| Q |
17 |
cagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatct |
76 |
Q |
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| T |
30056637 |
cagattatcgttatcgcgtttccacttccattgatgctggtattgatatggtatagatct |
30056578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 29611690 - 29611812
Alignment:
| Q |
4 |
caaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaattcctaaaatattctaacatata |
103 |
Q |
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| T |
29611690 |
caaccttatgggtccgattatcgttattgcatctccacttcaattaatgctggaattgacatggtacagatcttcagtccctgtaatattttaacataga |
29611789 |
T |
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| Q |
104 |
tttcttgatttcattttcaattt |
126 |
Q |
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| T |
29611790 |
ttgcttgatttcattttaaattt |
29611812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 30432795 - 30432710
Alignment:
| Q |
1 |
tgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaattccta |
86 |
Q |
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|||||||| ||| || || || ||| |||||||||||| |||| | || |||||| ||||||||||||||||||| ||||||||| |
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| T |
30432795 |
tgtcaaccttattggtcatattatcgttatcgcgtctccactttcgttaatgctggtattgatatggtatagatcttcaattccta |
30432710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 30203639 - 30203559
Alignment:
| Q |
4 |
caaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaattcc |
84 |
Q |
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| T |
30203639 |
caaccttatgcgtcagattatcattctcgcgtctccactctcatggatgctggaatagatatggtatagatcttcaattcc |
30203559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 20302782 - 20302863
Alignment:
| Q |
1 |
tgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaatt |
82 |
Q |
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|||||||| ||||| ||||| ||| ||||||||||| |||||| ||| |||||| |||||||||||||||| || ||||| |
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| T |
20302782 |
tgtcaacctgatgggtcagattatcgttatcgcgtctacacttccgttgatgctggtattgatatggtatagaacttcaatt |
20302863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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