View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_4 (Length: 528)
Name: NF4419_low_4
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_4 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 5 - 518
Target Start/End: Original strand, 51772602 - 51773112
Alignment:
| Q |
5 |
aacctattcatatctctcggtttctttaaatcaagattttttaaaattcttaatggtatgtatatgtctcatgtacaggttaccattccactaaagaaca |
104 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772602 |
aacctattcatatctctcggtttctctaaatcaagattttttaaaattcttaatggtatgtatatgtctcatgtacaggttaccattccactaaagaaca |
51772701 |
T |
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| Q |
105 |
tcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772702 |
tcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctt |
51772801 |
T |
|
| Q |
205 |
taattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatatcaaaagtccaccatatgtgcataatataaatagttggact |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772802 |
taattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatatcaaaagtccaccatatgtgcataatataaatagttggact |
51772901 |
T |
|
| Q |
305 |
ggaatgaagcttcatgttgcgaggacaaacattataagacagaacttaaatgagatgataaatattatagttgcagatattgggcactgtctttgataag |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772902 |
ggaatgaagcttcatgttgcgaggacaaacattataagactgaacttaaatgagatgataaatattatagttgcagatattgggcactgtctttgataag |
51773001 |
T |
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| Q |
405 |
aaggacttcatcgacagtattgatcatcctcaagcacaaaacatcttgctgaattttacctttccacacaagattgaccaattatgacagatgcacatga |
504 |
Q |
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| T |
51773002 |
aaggacttcatcgacagtattgatcatcctcaagcacaaaaca---tgctgaattttacctttccacacaagattgaccaattatgacagatgcacatga |
51773098 |
T |
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| Q |
505 |
ttcatttcattcat |
518 |
Q |
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|||||||||||||| |
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| T |
51773099 |
ttcatttcattcat |
51773112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 75 - 252
Target Start/End: Original strand, 51804277 - 51804454
Alignment:
| Q |
75 |
atgtacaggttaccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtgga |
174 |
Q |
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|||| |||||| |||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
51804277 |
atgttcaggttgccattccactgaagaagatcaagtgtgtgaggcagagtcaaaatgttgagaagccaacacaaaagtacataaacatagtcacaatgga |
51804376 |
T |
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| Q |
175 |
caattttgatttctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagc |
252 |
Q |
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| T |
51804377 |
caattttgatttctggcttatgggtgtcctaaaatatcagaaaactttcaaatatatcgagcaggcaatttctcaagc |
51804454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 51808238 - 51808401
Alignment:
| Q |
87 |
ccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgattt |
186 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||| ||||||||| |
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| T |
51808238 |
ccattccactgaagaatatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaagatagttacagaagacggttttgattt |
51808337 |
T |
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| Q |
187 |
ctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaa |
250 |
Q |
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|||| |||||||||| | || ||||| ||||| ||||| ||||||||| | |||||||||||| |
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| T |
51808338 |
ctggcttatgggtgttctaaaatatcagaaaactttcaaatatctcgagcaggcaatttctcaa |
51808401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 105 - 251
Target Start/End: Original strand, 51780538 - 51780684
Alignment:
| Q |
105 |
tcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctt |
204 |
Q |
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|||||||||||| |||||||||||||||||||||||||| || ||||||||||| || || |||||||| || || ||||||||| ||||||||||||| |
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| T |
51780538 |
tcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacgcagaagtacataaatatagttacagtggataacttcgatttctggcttatgggtgtctt |
51780637 |
T |
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| Q |
205 |
taattatcataaaacattcaactatctcgagaaagcaatttctcaag |
251 |
Q |
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| T |
51780638 |
aaaatatcagaaaactttcaaatatctcgagcaggcaatttcacaag |
51780684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 518
Target Start/End: Original strand, 51790262 - 51790345
Alignment:
| Q |
436 |
aagcacaaaacatcttgctgaattttacctttccacacaagattgaccaattatga-cagatgcacatgattcatttcattcat |
518 |
Q |
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| T |
51790262 |
aagcacaaaccatcttgcgggatttagtctttccacaaaagattgatcaattataaacagatgcacatgattcatttcattcat |
51790345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 51768085 - 51768127
Alignment:
| Q |
116 |
aatcaaagtcaaaatgttgagaagccaacacaaaagtacataa |
158 |
Q |
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| T |
51768085 |
aatcaaagtcaaaatgttgagaagccaacacaaaaggacataa |
51768127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 51768140 - 51768214
Alignment:
| Q |
190 |
gtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatat |
264 |
Q |
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| T |
51768140 |
gtttttgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtttagatgaatat |
51768214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 7182 - 7327
Alignment:
| Q |
105 |
tcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctt |
204 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| || ||||||||||| || || |||||||| || || ||||||||| ||||||||||||| |
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| T |
7182 |
tcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacgcagaagtacataaatatagttacagtggataacttcgatttctggcttatgggtgtctt |
7281 |
T |
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| Q |
205 |
taattatcataaaacattcaactatctcgagaaagcaatttctcaa |
250 |
Q |
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|| ||||| ||||| ||||| ||||||||| | |||||||||||| |
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| T |
7282 |
aaaatatcagaaaactttcaaatatctcgagcaggcaatttctcaa |
7327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 32908291 - 32908232
Alignment:
| Q |
75 |
atgtacaggttaccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttg |
134 |
Q |
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||||||| ||| |||| |||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
32908291 |
atgtacatgttgtcattacacttaagaagatcaagtgtgtgaatcaaagtcaaaatgttg |
32908232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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