View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_40 (Length: 232)
Name: NF4419_low_40
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 39491729 - 39491874
Alignment:
| Q |
71 |
aacttcaataagtttatcagtgaattggttgttaagaacgatccaagggtggtgcaggaaacctcagacaaagaggtaattgttgagcttcaaattgaag |
170 |
Q |
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| T |
39491729 |
aacttcaataagtttaccagggaattggtttttaagaacgatccaagggtggtgcaggaaacctcagacaaagaggtaattgttgagcttcaaattgaag |
39491828 |
T |
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| Q |
171 |
gtggagataagaatcacaagtacaatgatattgttaagaatgatct |
216 |
Q |
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| T |
39491829 |
gtggagataagaatcacaagtacaatgatattgttaagaatgatct |
39491874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 39491601 - 39491731
Alignment:
| Q |
2 |
aagaagagggttacggaaattaaagagttggcaagaaaaactttacaggaaggtggtagttctagcaagaacttcaataagtttatcagtgaattggttg |
101 |
Q |
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| T |
39491601 |
aagaagagggctacagaaattaaagagttggcaagaaaaactttacaggaaggtggtagttctagcaagaacttcaataagtttatcagtgaattggttg |
39491700 |
T |
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| Q |
102 |
ttaagaacgatccaagggtggtgcaggaaac |
132 |
Q |
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| T |
39491701 |
ttaagaacgatccaagggtggtgcaagaaac |
39491731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 39287434 - 39287317
Alignment:
| Q |
2 |
aagaagagggttacggaaattaaagagttggcaagaaaaactttacaggaaggtggtagttctagcaagaacttcaataagtttatcagtgaattggttg |
101 |
Q |
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| T |
39287434 |
aagaaaagggctatggaaattaaagattctgcaagaaaagctttggaggaagatggtagttctagtaataatttcaatcaatttataagtgaattgattg |
39287335 |
T |
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| Q |
102 |
ttaagaacgatccaaggg |
119 |
Q |
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| T |
39287334 |
ttaaaaacaattcaaggg |
39287317 |
T |
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