View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_43 (Length: 215)
Name: NF4419_low_43
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_43 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 41817 - 41667
Alignment:
| Q |
19 |
atcttactattgcttccttttctctccaaacagattttgttccagcagaagacaaattt-tcatatcagctctattgatgatttttccgaagtaatattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||| | | || |||| |||||| ||||||||||||||||||||||| |
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| T |
41817 |
atcttactattgcttccttttctctccaaacagattttgctccaacagaaaataaagatgttatgtcagttctattaatgatttttccgaagtaatattt |
41718 |
T |
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| Q |
118 |
tgatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc |
168 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||| |||| |
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| T |
41717 |
tgatttttggaagacttaaaatgacatccatccaagcttgagtgattcatc |
41667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 35147 - 35004
Alignment:
| Q |
19 |
atcttactattgcttccttttctctccaaacagattttgttccagcagaagacaaattttc-atatcagctctattgatgatttttccgaagtaatattt |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||| ||||| | ||| | || |||| |||||| ||||||||||||||||||||||| |
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| T |
35147 |
atcttactattgcttccttttctctccatacagattttgctccaacagaaaataaagatggtatgtcagttctattaatgatttttccgaagtaatattt |
35048 |
T |
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| Q |
118 |
tgatttttgtaagactttaaatgacatccatccaagcttgagtg |
161 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
35047 |
tgatttttggaagacttaaaatgacatccatccaagcttgagtg |
35004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 27445541 - 27445691
Alignment:
| Q |
19 |
atcttactattgcttccttttctctccaaacagattttgttccagcagaagacaaattt-tcatatcagctctattgatgatttttccgaagtaatattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||| | | || |||| |||||| ||||||||||||||||||||||| |
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| T |
27445541 |
atcttactattgcttccttttctctccaaacagattttgctccaacagaaaataaagatgttatgtcagttctattaatgatttttccgaagtaatattt |
27445640 |
T |
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| Q |
118 |
tgatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc |
168 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||| |||| |
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| T |
27445641 |
tgatttttggaagacttaaaatgacatccatccaagcttgagtgattcatc |
27445691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 20909455 - 20909306
Alignment:
| Q |
19 |
atcttactattgcttccttttctctccaaacagattttgttccagcagaagacaaattttcatatcagctctattgatgatttttccgaagtaatatttt |
118 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||||||||||| | || |||||| | |||||| |||| |||| |||||| |||||| |
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| T |
20909455 |
atcttgctattgcttccttttctctccaatcagattttgttccagcagaaaatgaagaatcatatttgttctattaatgagctttctgaagtagtatttt |
20909356 |
T |
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| Q |
119 |
gatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc |
168 |
Q |
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|| |||| |||||||||||||| ||||||||||||||||||||| |||| |
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| T |
20909355 |
tatatttggaagactttaaatgaaatccatccaagcttgagtgattcatc |
20909306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 20923903 - 20923754
Alignment:
| Q |
19 |
atcttactattgcttccttttctctccaaacagattttgttccagcagaagacaaattttcatatcagctctattgatgatttttccgaagtaatatttt |
118 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||||||||||| | || |||||| | |||||| |||| |||| |||||| |||||| |
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| T |
20923903 |
atcttgctattgcttccttttctctccaatcagattttgttccagcagaaaatgaagaatcatatttgttctattaatgagctttctgaagtagtatttt |
20923804 |
T |
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| Q |
119 |
gatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc |
168 |
Q |
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|| |||| |||||||||||||| ||||||||||||||||||||| |||| |
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| T |
20923803 |
tatatttggaagactttaaatgaaatccatccaagcttgagtgattcatc |
20923754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 42312569 - 42312420
Alignment:
| Q |
19 |
atcttactattgcttccttttctctccaaacagattttgttccagcagaagacaaattttcatatcagctctattgatgatttttccgaagtaatatttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||| | || |||||| || |||||| |||| |||| ||||| |||||| |
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| T |
42312569 |
atcttactattgcttccttttctctccaatcagattttgttctagcagaaaatgaagaatcatattagttctattaatgagctttctaaagtagtatttt |
42312470 |
T |
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| Q |
119 |
gatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc |
168 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||| |||| |
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| T |
42312469 |
tatttttggaagactttaaatgaaatccatccaagcttgagtgattcatc |
42312420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 41326353 - 41326204
Alignment:
| Q |
19 |
atcttactattgcttccttttctctccaaacagattttgttccagcagaagacaaattttcatatcagctctattgatgatttttccgaagtaatatttt |
118 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||| | || |||||| || |||||| || | |||| |||||| |||||| |
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| T |
41326353 |
atcttactattgcttccttttctctccaatcagattttgttccagcagaaaatgaagaatcatattagttctattaataagctttctgaagtagtatttt |
41326254 |
T |
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| Q |
119 |
gatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc |
168 |
Q |
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||||||| |||| ||||||||| ||||||||||||||||||||| |||| |
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| T |
41326253 |
tatttttggaagaatttaaatgaaatccatccaagcttgagtgattcatc |
41326204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 47246912 - 47246992
Alignment:
| Q |
88 |
tctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc |
168 |
Q |
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|||||| |||| |||| |||||| |||||| ||||||| ||| |||||||||| ||||||||||||||||||||| |||| |
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| T |
47246912 |
tctattaatgagctttctgaagtagtatttttatttttggaaggctttaaatgaaatccatccaagcttgagtgattcatc |
47246992 |
T |
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