View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_7 (Length: 430)
Name: NF4419_low_7
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 10272983 - 10273385
Alignment:
| Q |
14 |
catcataaacatcaaggtctgagatgcaagtcgcatttcctgagctagcaattcccgcattgccaggagcacagaatacagtatcacaggacggtgaccg |
113 |
Q |
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| T |
10272983 |
catcataaacatcaaggtctgagatgcaagtcgcatttcctgagctggcaattcccgcattgccaggagcacagaatacagtatcacaggatggtgaccg |
10273082 |
T |
|
| Q |
114 |
ttgcaacgcatagcaaagtgcatgttcacgtcctcctccaccaataaccagaacagccaccctttcttcttaggaataagcnnnnnnnnnnnnnnnnnnn |
213 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10273083 |
ttgcaacgcgtagcaaagtgcatgttcacgtcctcctccaccaataaccagaacagccaccctttcttcttaggaataagcaaaatgaaaaacaaaacaa |
10273182 |
T |
|
| Q |
214 |
nnnncagtatatgcaataaagttagtatatagttcatattcatatacaacatcacaagcatgcttggttccgtggcgcgnnnnnnnnttgattttgtaaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10273183 |
aaaacagtatatgcaataaagttagtatatagttcatattcatatacaacatcacaagcatgcttggttccgtggcgcgacaaaaaattgattttgtaaa |
10273282 |
T |
|
| Q |
314 |
attgat-----ttataagtgagttgaatataaaatgatttatacttgaatacattttcgtacaagtgggttgaaattgaataataaatttcagtgtgtaa |
408 |
Q |
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||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10273283 |
attaattttacttataagtgagttgaatataaaatgatttatgcttgaatacattttcgtacaagtgggttgaaattgaataataaatttcagtgtgtaa |
10273382 |
T |
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| Q |
409 |
atc |
411 |
Q |
| |
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||| |
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| T |
10273383 |
atc |
10273385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 13504946 - 13504978
Alignment:
| Q |
327 |
tgagttgaatataaaatgatttatacttgaata |
359 |
Q |
| |
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| T |
13504946 |
tgagttgaatataaaatgatttatatttgaata |
13504978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 34259148 - 34259182
Alignment:
| Q |
329 |
agttgaatataaaatgatttatacttgaatacatt |
363 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
34259148 |
agttgaatataaaatgatttatatttgaatacatt |
34259182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 26975310 - 26975350
Alignment:
| Q |
320 |
ttataagtgagttgaatataaaatgatttatacttgaatac |
360 |
Q |
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||||||||||||||||| ||||||||||||| |||||||| |
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| T |
26975310 |
ttataagtgagttgaatgtaaaatgatttatgtttgaatac |
26975350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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