View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4419_low_9 (Length: 416)
Name: NF4419_low_9
Description: NF4419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4419_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 9679690 - 9679284
Alignment:
| Q |
1 |
tattctccccgtgaagttgttccgagaaagtgaaagaatttgaaggaactgcaatttcataaggcttttaccgatatgtcctgaaagagagaatccatca |
100 |
Q |
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| T |
9679690 |
tattctccccgtgaagttgttccgagaaagtgaaagaatttgaaggaactgtaatctcataaggcttttaccaatatgtcctgaaagagagaatccatca |
9679591 |
T |
|
| Q |
101 |
agaacaagagaagataccctatttgttgaaggatcacatttgacaccttcccaattgcaaggactataatcatcttcattccaagaagaaagtttgtttt |
200 |
Q |
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| T |
9679590 |
agaacaagagaagataccctatttgttgaaggatcacatttaacaccttcccaattgcaaggactataatcatcttcattccaagaagaaagtttgtttt |
9679491 |
T |
|
| Q |
201 |
tcggatcttctagacctgctttgaacacaatcaaccctagcatatcttcattgaaaggttggttttgtgagatcacttggattggaccaaaaagaacaag |
300 |
Q |
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| T |
9679490 |
tcggatcttctagacctgctttgaacacaatcaaccctagcatatcttcattgaaaggttggttttgtgagatcacttggagtggaccaaaaagaacaag |
9679391 |
T |
|
| Q |
301 |
aaacaaagataggatgatgaattgatcttgcattgttagattgatggatagaatttaggaaagtgtttagaagaggttttcatgaacattgctatttcca |
400 |
Q |
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| T |
9679390 |
aaacaaagataggatgatgaattgatcttgcattgttagattgatggatagaatttaggaaagtgtttagaagaggttttcatgaacattgctatttcca |
9679291 |
T |
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| Q |
401 |
tattctt |
407 |
Q |
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| T |
9679290 |
ttttctt |
9679284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 27380149 - 27380394
Alignment:
| Q |
11 |
gtgaagttgttccgagaaagtgaaagaatttgaaggaactgcaatttcataaggcttttaccgatatgtcctgaaagagagaatccatcaagaacaagag |
110 |
Q |
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| T |
27380149 |
gtgaaattgttaccagaaagtgatagagtttgaagaaactgcaatctcaataagcctctatcaatgtgacctgaaagagagaatccatcaagtataacag |
27380248 |
T |
|
| Q |
111 |
aagataccctatttgttgaaggatcacatttgacaccttcccaattgcaaggactataatcatcttcattccaagaagaaagtttgtttttcggatcttc |
210 |
Q |
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||| || ||||| |||||| ||||||||| |||||||||||||| |||||| | ||||||||||||||||| ||| ||||||| ||| ||||||| |
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| T |
27380249 |
aagtgactctattgtttgaagaatcacatttcacaccttcccaattacaaggagtgtaatcatcttcattccatgaaatgagtttgtgtttaggatcttg |
27380348 |
T |
|
| Q |
211 |
tagacctgctttgaacacaatcaaccctagcatatcttcattgaaa |
256 |
Q |
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| T |
27380349 |
taaaccagctttaaacacaattaagcctaatatatcatcattgaaa |
27380394 |
T |
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