View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4420_high_3 (Length: 235)

Name: NF4420_high_3
Description: NF4420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4420_high_3
NF4420_high_3
[»] chr2 (2 HSPs)
chr2 (123-221)||(28825599-28825697)
chr2 (84-121)||(4614338-4614375)
[»] chr3 (1 HSPs)
chr3 (64-122)||(28957774-28957832)
[»] chr5 (1 HSPs)
chr5 (81-121)||(36974132-36974172)


Alignment Details
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 28825697 - 28825599
Alignment:
Q  123 caagaatgagggagagccataaaattttattttaattttatacgaagcaagagccataatacttttactggataataatattgaaacatagttgaaact 221  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  28825697 caagaaagagggagagccataaaattttattttaattttatacaaagcaagagccttaatacttttattggataaaaatattgaaacatagttgaaact 28825599  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 4614375 - 4614338
Alignment:
Q  84 cattgattaagaaaacaaatgtagtaaatattacatta 121  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  4614375 cattgattaagaaagcaaatgtagtaagtattacatta 4614338  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 28957832 - 28957774
Alignment:
Q  64 gttaattgatgtttatggaacattgattaagaaaacaaatgtagtaaatattacattaa 122  Q
    |||||| ||||||||||||||| |||||||| ||  |||| || |||||||||||||||    
T  28957832 gttaatcgatgtttatggaacactgattaaggaattaaatataataaatattacattaa 28957774  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 36974172 - 36974132
Alignment:
Q  81 gaacattgattaagaaaacaaatgtagtaaatattacatta 121  Q
    ||||| || |||||||||||||||||||||||||| |||||    
T  36974172 gaacactggttaagaaaacaaatgtagtaaatattgcatta 36974132  T

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