View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4420_low_1 (Length: 480)
Name: NF4420_low_1
Description: NF4420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4420_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 130 - 466
Target Start/End: Original strand, 40198132 - 40198468
Alignment:
| Q |
130 |
gggaagggcttggagagtcatatgacggggacattgcatttataagttcccttgatagttttggaggaggccatactgatcctcatttcgttgcattggg |
229 |
Q |
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| T |
40198132 |
gggaagggcttggagagtcatatgacggggacattgcatttataagttcccttgatagttttggaggaggccatactgatcctcatttcgttgcattggg |
40198231 |
T |
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| Q |
230 |
aggtaagccatataatccgtttaattaaacattatcttttctcttcattttaatatattttgttttcactactcccaggacctgtaatgaacaaatttac |
329 |
Q |
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| T |
40198232 |
aggtaagccatataatccgtttaattaaacattatcctttctcttcattttaatatattttgttttcactactcccaggacctgtaatgaacaaatttac |
40198331 |
T |
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| Q |
330 |
cattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaatcattatctattcaagttttatttctcaattgatattgctatgctga |
429 |
Q |
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| T |
40198332 |
cattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaatcattatctattgaacttttatttctcaattgatattgctatgctga |
40198431 |
T |
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| Q |
430 |
ctgtacttaatatggcttcttaggtagaccacatgat |
466 |
Q |
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| T |
40198432 |
ctgtacttaatatggcttcttaggtagaccacatgat |
40198468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 45083905 - 45083984
Alignment:
| Q |
304 |
ccaggacctgtaatgaacaaatttaccattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaat |
383 |
Q |
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| T |
45083905 |
ccaggacctgtaatggccaaattctctattgctttgagagaaatcagtacacacaaggaacttcttcgttcacaggtaat |
45083984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 45083679 - 45083762
Alignment:
| Q |
130 |
gggaagggcttggagagtcatatgacggggacattgcatttataagttcccttgatagttttggaggaggccatactgatcctc |
213 |
Q |
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| T |
45083679 |
gggaagggcttggagaggcatatgatggagacattgcatttgcaactgcccttgaaaattttggaggaggccatagtgatcctc |
45083762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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