View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4420_low_2 (Length: 393)
Name: NF4420_low_2
Description: NF4420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4420_low_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 200 - 393
Target Start/End: Original strand, 40140548 - 40140741
Alignment:
| Q |
200 |
tcaacaagaagtctgctcagtggtaaaactttgatcttgtaatctcaatcgaccaaaggtgttcgttgagagacttgtcattggatgtgatatagttcga |
299 |
Q |
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| T |
40140548 |
tcaacaagaagtctgctcagtggtaaaactttgatcttgtaatctcaattgaccaaaggtgtttgttgagagacttgtcattggatgtgatatagttcga |
40140647 |
T |
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| Q |
300 |
ttaagtgttcataatcagaaatcttgtgagcttgaattaaatccaactcaaatgtggacatgtatgtatcttattcttaacaaacaataaagtt |
393 |
Q |
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| T |
40140648 |
ttaagtgttcataatcagaaatcttgtgagcttgaattaaatccaactcaaatgtggacatgtatgtatcttattcttaacaaacaataaagtt |
40140741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 40140469 - 40140539
Alignment:
| Q |
98 |
atttgtagaaatccatccctgaaaatgaagaaataaacaaaaacaaatcatcagtttccaatgtatatgta |
168 |
Q |
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| T |
40140469 |
atttgtagaaatccatccctgaaaatgaagaaagaaacaaaaacaaatcatcagtttccaatgtatatgta |
40140539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 40140175 - 40140116
Alignment:
| Q |
18 |
aatgagttgaacatgtttaagctttcaagacaatgtttcgaaattgcaaacgccgcatca |
77 |
Q |
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| T |
40140175 |
aatgagttgaacatgtttaatctttcgagacaatgtttcgaaattgcgaatgccgcatca |
40140116 |
T |
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