View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4420_low_3 (Length: 255)
Name: NF4420_low_3
Description: NF4420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4420_low_3 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1034060 - 1033823
Alignment:
| Q |
1 |
cgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034060 |
cgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcct |
1033961 |
T |
|
| Q |
101 |
ttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgacagtaaagaatattgtacttactgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1033960 |
ttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgacagtaaagaatattgtacttattgag |
1033861 |
T |
|
| Q |
201 |
ggcattaaccatataaagtcccaattctgtgggattgg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1033860 |
ggcattaaccatataaagtcccaattctgtgggattgg |
1033823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1044447 - 1044210
Alignment:
| Q |
1 |
cgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcct |
100 |
Q |
| |
|
||||||||||| |||||||||||| | || || |||||||||| |||||| |||||||||||||| ||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
1044447 |
cgaccataaactacaagatctgccttgttttcagctatagcatcgatcccgtcttgtctgtcatagcctcctgcagccatgaaagagccattgaaagcct |
1044348 |
T |
|
| Q |
101 |
ttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgacagtaaagaatattgtacttactgag |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1044347 |
ttctcattggcaccagactgtaagggctttcaatcgtttcagaagctgattttattcttggttccaccatgtgacagtaaagaatattgtacttattgag |
1044248 |
T |
|
| Q |
201 |
ggcattaaccatataaagtcccaattctgtgggattgg |
238 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
1044247 |
ggcattaaccatatgaagtcccaattcattgggattgg |
1044210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 1071789 - 1071562
Alignment:
| Q |
1 |
cgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcct |
100 |
Q |
| |
|
|||||||| ||||| || |||||||| || || ||||| |||||||||||||| |||| ||| |||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
1071789 |
cgaccatatacaactaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcct |
1071690 |
T |
|
| Q |
101 |
ttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgacagtaaagaatattgtacttactgag |
200 |
Q |
| |
|
||||||| ||||| || |||| |||| |||| | ||||| || | | | ||||||||||||||||||||||| ||||||||| ||| ||| |||| |
|
|
| T |
1071689 |
ttctcattggcacaaggctgtcggggcattcagttttttcaccaacagttatcattcttggttccaccatgtgacaataaagaataccgtatttattgag |
1071590 |
T |
|
| Q |
201 |
ggcattaaccatataaagtcccaattct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
1071589 |
ggcattaaccatataaagtcccaattct |
1071562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1066062 - 1065836
Alignment:
| Q |
1 |
cgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcct |
100 |
Q |
| |
|
|||||||| |||||||| |||||||| || || ||||| |||||||||||||| |||| ||| |||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
1066062 |
cgaccatatacaacaaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcct |
1065963 |
T |
|
| Q |
101 |
ttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgacagtaaagaatattgtacttactgag |
200 |
Q |
| |
|
||||||| ||||| || |||| |||| |||| | ||||| || | ||| ||||||||||||||||| ||||||||||||||| || ||| |||| |
|
|
| T |
1065962 |
ttctcattggcacaaggctgtcggggcattcagttttttcaccaacagttttcattcttggttccaccatatgacagtaaagaataccatatttattgag |
1065863 |
T |
|
| Q |
201 |
ggcattaaccatataaagtcccaattc |
227 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
1065862 |
ggcattgaccatataaagtcccaattc |
1065836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 1058970 - 1058735
Alignment:
| Q |
1 |
cgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcct |
100 |
Q |
| |
|
|||||||| |||||||| |||| |||||| || ||||| |||||||||||||| | || ||| |||||||| ||| ||| |||||| || ||||| |||| |
|
|
| T |
1058970 |
cgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcct |
1058871 |
T |
|
| Q |
101 |
ttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgacagtaaagaatattgtacttactgag |
200 |
Q |
| |
|
||||||| ||||| || |||| || || |||||| |||||| | | ||| |||||||||||||||| ||||||||||||||| || ||| |||| |
|
|
| T |
1058870 |
ttctcatcggcacaaggctgtgagagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgag |
1058771 |
T |
|
| Q |
201 |
ggcattaaccatataaagtcccaattctgtgggatt |
236 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
1058770 |
ggcattagccatataaagtcccaattctctgggatt |
1058735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 1640496 - 1640723
Alignment:
| Q |
1 |
cgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcct |
100 |
Q |
| |
|
||||||||| |||||||||||| | |||| || |||| |||| ||||||||||||| ||| ||||| ||||| || ||||| |||||||| || | |
|
|
| T |
1640496 |
cgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagttccattgaaggctt |
1640595 |
T |
|
| Q |
101 |
ttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgacagtaaagaatattgtacttactgag |
200 |
Q |
| |
|
||||||| ||||||| |||| | | | ||||| ||||| | | | ||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1640596 |
ttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgag |
1640695 |
T |
|
| Q |
201 |
ggcattaaccatataaagtcccaattct |
228 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
1640696 |
ggcattaaccatataaagccccaattct |
1640723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 1053705 - 1053478
Alignment:
| Q |
1 |
cgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcct |
100 |
Q |
| |
|
||||||||| ||| ||||||||||||||| || |||||||||||||| ||||||||||| ||||| ||||| | |||||| ||||| ||||||||| ||| |
|
|
| T |
1053705 |
cgaccataagcaataagatctgccctattttcagctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacct |
1053606 |
T |
|
| Q |
101 |
ttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgacagtaaagaatattgtacttactgag |
200 |
Q |
| |
|
|||| || | ||||| || ||| | | |||| | | |||||| || ||||||||||||||||| ||||| ||||||||| || ||| |||| |
|
|
| T |
1053605 |
ttcttattgacaccaagctataatgacattcagttttctcatcaagaatttccattcttggttccaccatatgacaataaagaataccatatttattgag |
1053506 |
T |
|
| Q |
201 |
ggcattaaccatataaagtcccaattct |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
1053505 |
ggcattcaccatataaagtcccaattct |
1053478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 1047023 - 1046919
Alignment:
| Q |
11 |
caacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcctttctcatggg |
110 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||| ||| |||| ||||| | ||| | |||||||||||| ||||||||||||||||||| || |
|
|
| T |
1047023 |
caacaagatctaccctattttcagctatagcattgatcccgtctagtctttcatagcttccggtaaccatgaaagtgccattgaaagcctttctcactgg |
1046924 |
T |
|
| Q |
111 |
cacca |
115 |
Q |
| |
|
||||| |
|
|
| T |
1046923 |
cacca |
1046919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 65897 - 65854
Alignment:
| Q |
1 |
cgaccataaacaacaagatctgccctattatctgctatagcatt |
44 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
65897 |
cgaccataaacaacaagatctgccttattttctgctatagcatt |
65854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University