View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4421-Insertion-2 (Length: 1037)
Name: NF4421-Insertion-2
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4421-Insertion-2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 679; Significance: 0; HSPs: 20)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 8 - 757
Target Start/End: Original strand, 2050921 - 2051668
Alignment:
| Q |
8 |
tggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatatgtccttaaactgtaagaatcaatatgccacttat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
2050921 |
tggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatatgtccttaaattgttagaatcaatatgccacttat |
2051020 |
T |
|
| Q |
108 |
tgagcaatcggaatgagtccggcactaagaaaaacagacaccaaagctacaaaaataggacacaccatgcaaactaatttggctaatctaatttatcacg |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2051021 |
tgagcaatcggaatgagtccagcactaagcaaaacagacaccaaagctccaaaaataggacacaccatgcaaactaatttggctaatctaatttatcatg |
2051120 |
T |
|
| Q |
208 |
gtgctgttttggttctttgtaattagtcaagtctcctgcattttcaacttggcttcaagcatatagcatatgccttatcatctatctcatttgaggtgtt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2051121 |
gtgctgttttggttctttgtaattagtcaagtctcctgcattttcaacttggcttcaagcatatagcat--gccttatcatctatctcatttgaggtgtt |
2051218 |
T |
|
| Q |
308 |
atgctatgtattttgtgccttcttctattgtttactttacaattaacttgactagttcatcatatactagatctctcaaactttactattaatttttagt |
407 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
2051219 |
atgttatgttttttgtgccttcttctattgtttactttacaagtaacttgactagttcatcatatactagatctctcaaactttactagtcatttttagt |
2051318 |
T |
|
| Q |
408 |
agattatagtaatacattctatatacagagatagaacactgcctagcttggagaatgtgcaccgtcctatgccaaaatgaccttactctttcacaaatga |
507 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2051319 |
agaataaagtaatacattctatatacagagatagaacactgcctagcttggagaatgtgcactgtcctatgccaaaatgaccttactctttcacaaatga |
2051418 |
T |
|
| Q |
508 |
ctacctagttttccttctctagccctcatctttatttatacgcaaaatgcattattattcatagaagaatgatagattcctcctaatgaggtagaacttg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2051419 |
ctacctagttttccttctctagccctcatctttatttatacgcaaaatgcattattattcatagaagaatgatagattcctcctaatgaggtagaacttg |
2051518 |
T |
|
| Q |
608 |
tttgtttttgtttgttgtagttcgaagcattggcttaaatatagattgaatcgactgtttcaaccaattgaatcaatttaccggctggtttgactcgatt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2051519 |
tttgtttttgtttgttgtagttcgaagcattggcttaaatatagattgaatcgactgtttcaaccaattgaatcagtttaccggctggtttgactcgatt |
2051618 |
T |
|
| Q |
708 |
acattgagtttgcttttatcaaattgtactaggattgaactgggttcaac |
757 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2051619 |
acattgagtttgcttttatcaaattgtactaggattgaactgggttcaac |
2051668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 94 - 445
Target Start/End: Original strand, 2058471 - 2058822
Alignment:
| Q |
94 |
aatatgccacttattgagcaatcggaatgagtccggcactaagaaaaacagacaccaaagctacaaaaataggacacaccatgcaaactaatttggctaa |
193 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2058471 |
aatatgccacttattgagcaaccagaatgtgtcctgcagtaagcgaaacagacaccaaaattacaaaaataggacacaccatgcaaactaatttggctaa |
2058570 |
T |
|
| Q |
194 |
tctaatttatcacggtgctgttttggttctttgtaattagtcaagtctcctgcattttcaacttggcttcaagcatatagcatatgccttatcatctatc |
293 |
Q |
| |
|
| ||||||||| | |||| ||||||||||||||||||| |||||| || |||||||| ||||||| |||||||||||||| |||||||||| | ||| |
|
|
| T |
2058571 |
taaaatttatcatgatgctattttggttctttgtaattaatcaagtttcttgcatttttaacttggtttcaagcatatagc--atgccttatcttgcatc |
2058668 |
T |
|
| Q |
294 |
tcatttgaggtgttatgctatgtattttgtgccttcttctattgtttactttacaattaa--cttgactagttcatcatatactagatctctcaaacttt |
391 |
Q |
| |
|
| |||||||||||||||||| | ||||||| |||||||||||| |||||| || | ||| || ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
2058669 |
ttatttgaggtgttatgctacgatttttgtgtcttcttctattgcttacttcactagtaattttttactagttgatcatatactggatctctcaaacttt |
2058768 |
T |
|
| Q |
392 |
actattaatttttagtagattatagtaatacattctatatacagagatagaaca |
445 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||| |||| |||||||||||| |
|
|
| T |
2058769 |
actagccatttttagtagaatatagtgatacattctctatatagagatagaaca |
2058822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 808 - 1009
Target Start/End: Original strand, 2051718 - 2051922
Alignment:
| Q |
808 |
ataatcatgtgtcaccaggatcgatcgtgattgaaccaatattaaaccatgacctaaaggtctaattgattcgatttttcgtcagg-ttttaagatatta |
906 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
2051718 |
ataatcatgtgtcaccaggatcgatcgtgtttgaaccaatattaaaccatgacctaaaggtctaattgattcgatttttggtcaggtttttaagatatta |
2051817 |
T |
|
| Q |
907 |
attggaaggatcgataatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattac-aatgacaaattcaagagtg-tgtacataga |
1004 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
2051818 |
attggaaggatcgataatagatgtaaacatacaactaattatttgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacataga |
2051917 |
T |
|
| Q |
1005 |
gtact |
1009 |
Q |
| |
|
||||| |
|
|
| T |
2051918 |
gtact |
2051922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 823 - 1009
Target Start/End: Original strand, 2055589 - 2055779
Alignment:
| Q |
823 |
caggatcgatcgtgattgaaccaatattaaaccatgacctaaaggtctaattgattcgatttttcgtcagg-ttttaagatattaattggaaggatc-ga |
920 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || |||||| ||||||||||||| ||| ||||||| | |
|
|
| T |
2055589 |
caggttcgatcgtgattgaaccaatattaaaccatgaccttaaggtctcattgattcgattcttggtcaggtttttaagatattatttgaaaggatcggt |
2055688 |
T |
|
| Q |
921 |
taatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattac-aatgacaaattcaagagtg-tgtacatagagtact |
1009 |
Q |
| |
|
|||| |||||||||| |||||||||| | |||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2055689 |
taatagatgtaaacacataactaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttgtacatagagtact |
2055779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 2029630 - 2029695
Alignment:
| Q |
8 |
tggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatat |
73 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2029630 |
tggagctctcgtagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtttatat |
2029695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 2055330 - 2055406
Alignment:
| Q |
8 |
tggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatatgtccttaaact |
84 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |||||| |
|
|
| T |
2055330 |
tggagctctaatagttaatgttggtgatcttttgcaggcaagttttatgcatacttatgtgtatatttccataaact |
2055406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 1948525 - 1948466
Alignment:
| Q |
8 |
tggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgt |
67 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1948525 |
tggagctctcatagttaatattggtgatcttttgcaggcaagttttatgtattcttatgt |
1948466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 2034189 - 2034267
Alignment:
| Q |
8 |
tggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatatgtccttaaactgt |
86 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
2034189 |
tggagctctcattgttgatgtcggtgatcttctgcaggcaagttttatgtattcttatgtttatatttccataaactgt |
2034267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 919 - 1007
Target Start/End: Original strand, 2058891 - 2058981
Alignment:
| Q |
919 |
gataatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattac-aatgacaaattcaagagtg-tgtacatagagta |
1007 |
Q |
| |
|
|||||| | |||||||||||| |||||||| || |||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
2058891 |
gataataggtgtaaacatatatctaattatttgattgtttgaattgtagcttataacaaatgacaaattcaagagtgttgtacatagagta |
2058981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 2058154 - 2058219
Alignment:
| Q |
8 |
tggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatat |
73 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||||| |
|
|
| T |
2058154 |
tggagctctcctagttaatgttggtgatcttcttcaggcaagttttatgcattcttatgtgtatat |
2058219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 10768658 - 10768730
Alignment:
| Q |
12 |
gctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatatgtccttaaact |
84 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| |||| ||| |||||| |
|
|
| T |
10768658 |
gctctcatagttaatgttggagatcttttgcaggcaagttttctgcattcttatgtgcatatttccataaact |
10768730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 829 - 876
Target Start/End: Original strand, 2058840 - 2058887
Alignment:
| Q |
829 |
cgatcgtgattgaaccaatattaaaccatgacctaaaggtctaattga |
876 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2058840 |
cgatcgtgattgaaccaatattaaaccatgacctaaaggtctcattga |
2058887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 2037753 - 2037817
Alignment:
| Q |
8 |
tggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtata |
72 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| ||| | | |||||||||| |
|
|
| T |
2037753 |
tggagctctcatagttaatattggtgatcttctgcaggcaagttttctgtgtccgtatgtgtata |
2037817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 2047109 - 2047192
Alignment:
| Q |
101 |
cacttattgagcaatcggaatgagtccggcactaagaaaaacagacaccaaagctacaaaaataggacacaccatgcaaactaa |
184 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||| ||| ||||||| |||||||| ||||| ||| | |||||||||||||| |
|
|
| T |
2047109 |
cacttattgagcaatcagaatgtttcctgcactaagtaaagcagacacgaaagctactaaaattggagaaaccatgcaaactaa |
2047192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 926 - 1007
Target Start/End: Complemental strand, 1948329 - 1948246
Alignment:
| Q |
926 |
gatgtaaacatataactaattatatgtttgtttgaattgtagcttattac-aatgacaaattcaagagtg-tgtacatagagta |
1007 |
Q |
| |
|
|||| ||||||||| |||||||| | |||||||| ||||||||||| || ||||||||||||||||||| || |||||||||| |
|
|
| T |
1948329 |
gatgcaaacatatagctaattattttcttgtttgatttgtagcttataacaaatgacaaattcaagagtgttgaacatagagta |
1948246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 929 - 995
Target Start/End: Original strand, 2034625 - 2034692
Alignment:
| Q |
929 |
gtaaacatataactaattatatgtttgtttgaattgtagcttattac-aatgacaaattcaagagtgt |
995 |
Q |
| |
|
|||| ||||||||||||||| |||||| || ||||||||||||| || ||||||| |||||||||||| |
|
|
| T |
2034625 |
gtaagcatataactaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgt |
2034692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 291 - 384
Target Start/End: Original strand, 2047663 - 2047754
Alignment:
| Q |
291 |
atctcatttgaggtgttatgctatgtattttgtgccttcttctattgtttactttacaattaacttgactagttcatcatatactagatctctc |
384 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||| || ||| ||| ||||| | ||| |||||||||||| |||| |||||||||||| |
|
|
| T |
2047663 |
atctaatttgaggtgttat--tatgccttttgtgccttctactgttgcttaatttactagtaatttgactagttcaacataaactagatctctc |
2047754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 2046992 - 2047037
Alignment:
| Q |
8 |
tggagctctcatagttaatgttggtgatcttttgcaggcaagtttt |
53 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
2046992 |
tggatctctcatagttaatgttggtgatcttctgcaggtaagtttt |
2047037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 926 - 1007
Target Start/End: Original strand, 2029704 - 2029787
Alignment:
| Q |
926 |
gatgtaaacatataactaattatatgtttgtttgaattgtagcttattac-aatgacaaattcaagagtg-tgtacatagagta |
1007 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||||||||| || ||||| | ||||||||||| || |||||||||| |
|
|
| T |
2029704 |
gatgtaagcatataactaattatttgtttgtttaccttgtagcttataacaaatgatagattcaagagtgttgaacatagagta |
2029787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 265
Target Start/End: Original strand, 2037894 - 2038016
Alignment:
| Q |
138 |
aaaacagacaccaaagctacaaaaataggacacaccatgcaaactaatttggctaatctaatttatcacggtgctgttttggttctttgtaattagtcaa |
237 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||||||||||| ||| ||||||||||||| | | | ||||||||| | |||||||||| || | |
|
|
| T |
2037894 |
aaaacagacaccaaagctact----tagtacaatccatgcaaactaaaatggataatctaatttatgatgattctgttttggct-tttgtaattaatcga |
2037988 |
T |
|
| Q |
238 |
gtctcctgcattttcaacttggcttcaa |
265 |
Q |
| |
|
|||| ||||||||||| |||| ||||| |
|
|
| T |
2037989 |
atctcttgcattttcaaattggtttcaa |
2038016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 17183348 - 17183271
Alignment:
| Q |
8 |
tggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatatgtccttaaactg |
85 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||| ||| ||||||| |
|
|
| T |
17183348 |
tggagctctcatagttaatgttggcgatcttttgcaggcaagttttatgtactcttacgtttataattccataaactg |
17183271 |
T |
|
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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 48906816 - 48906776
Alignment:
| Q |
13 |
ctctcatagttaatgttggtgatcttttgcaggcaagtttt |
53 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
48906816 |
ctctcgtagttaatgttggtgaccttttgcaggcaagtttt |
48906776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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