View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4421-Insertion-3 (Length: 1030)

Name: NF4421-Insertion-3
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4421-Insertion-3
NF4421-Insertion-3
[»] chr1 (4 HSPs)
chr1 (99-789)||(26837814-26838515)
chr1 (842-1019)||(26837638-26837817)
chr1 (8-101)||(26838558-26838651)
chr1 (853-913)||(10380784-10380843)
[»] chr4 (3 HSPs)
chr4 (853-920)||(18513237-18513305)
chr4 (849-903)||(25950557-25950611)
chr4 (867-903)||(49659536-49659573)
[»] chr7 (2 HSPs)
chr7 (864-903)||(23751906-23751946)
chr7 (865-903)||(29812677-29812716)
[»] chr6 (3 HSPs)
chr6 (858-914)||(201501-201557)
chr6 (864-903)||(6389749-6389789)
chr6 (865-914)||(34547208-34547257)
[»] chr5 (4 HSPs)
chr5 (858-905)||(2577191-2577239)
chr5 (853-903)||(39696012-39696063)
chr5 (865-903)||(43554528-43554567)
chr5 (853-914)||(12927649-12927711)
[»] chr3 (1 HSPs)
chr3 (864-903)||(15864839-15864879)
[»] chr2 (2 HSPs)
chr2 (864-903)||(23354665-23354705)
chr2 (858-903)||(24011036-24011082)
[»] chr8 (1 HSPs)
chr8 (865-903)||(39820436-39820475)
[»] scaffold0049 (1 HSPs)
scaffold0049 (868-920)||(56932-56985)


Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 99 - 789
Target Start/End: Complemental strand, 26838515 - 26837814
Alignment:
Q  99 tcatgggtaaatctgacagaatactcgatacacatcatttttcttaaccttcttcaatgattacattgatttttcggtagagccnnnnnnnnnnnnggga 198  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||            ||||    
T  26838515 tcatgggtaaatctgacagaatactcgatacacattatttttctcaaccttcttcaatgattacagtgattttttggtagagccaaaaataaaaaaggga 26838416  T
Q  199 agaatttacctatagtagtactatgaaaatgtaaacttcctatgaatgagccagaaaactatatctaacagttttacataaacttttttgtaattaagtt 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26838415 agaatctacctatagtagtactatgaaaatgtaaacttcctatgaatgagccaaaaaactatatctaacagttttacataaacttttttgtaattaagtt 26838316  T
Q  299 ataactgataaccataattttgaatgcgaatcttgaggtagcaatgtctactgatagatttaaccaaagtcaataatgattcaaacaaggcaacaattca 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  26838315 ataactgataaccataattttgaatgcgaatcttgaggtagcaatgtctaccgatagatttaaccaaagtcaataatgattcaaacaaggcaacaattta 26838216  T
Q  399 ctatggagtataagataataagacaaagacatacaagccagtgcttttgatgtaataattcaaacgtggatacatcttttaggtacatgtgttttttgtg 498  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838215 ctatggagtataagacaataagacaaagacatacaagccagtgcttttgatgtaataattcaaacgtggatacatcttttaggtacatgtgttttttgtg 26838116  T
Q  499 catttttagtatcatgttttataaattatgggnnnnnnntagaaa----gatcattcttatttttgctaaacaatcggtacaagttagttcttgaaaaga 594  Q
    ||||||||||||||||||||||||||||||||       ||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838115 catttttagtatcatgttttataaattatgggaaaaaaatagaaagatcgatcattcttatttttgctaaacaatcggtacaagttagttcttgaaaaga 26838016  T
Q  595 agagaagacgacgacatgttgacaaccttaatataggaatcaagagtaagttttgtggaagtaagagggaaggtgcaatgtctagtccaattgaaataaa 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838015 agagaagacgacgacatgttgacaaccttaatataggaatcaagagtaagttttgtggaagtaagagggaaggtgcaatgtctagtccaattgaaataaa 26837916  T
Q  695 aatacacacgctttgcaaagtaccaaccacatatc-------nnnnnnngagagaagagaaacaaaaatgatgtcgaacaccgaacacaaacatatgaac 787  Q
    |||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26837915 aatacacacgctttgcaaagtaccaaccacatatcttttttttttttttgagagaagagaaacaaaaatgatgtcgaacaccgaacacaaacatatgaac 26837816  T
Q  788 aa 789  Q
    ||    
T  26837815 aa 26837814  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 842 - 1019
Target Start/End: Complemental strand, 26837817 - 26837638
Alignment:
Q  842 acaatatatgaacactgacatcgataataatttgaaaaa-tgatataatttagtgtaatcatatgagtcagtgttgtgtcaaacaccaacacatatctgg 940  Q
    |||| ||||||||||||||||| |||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  26837817 acaacatatgaacactgacatcaataataatttgaaaaaataatataatttagtgtaattatatgagtcagtgttgtgtcaaacaccaacgcatgtctgg 26837718  T
Q  941 cacca-gacccacataattcaaggagggtatgatacaagtggtaaatattatataagctgtggtcattacttattagtat 1019  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  26837717 caccaagacccacataattcaaggagtgtatgatacaagtggtaaatattatataagctgtggtcgttactcattagtat 26837638  T

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Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 26838651 - 26838558
Alignment:
Q  8 ataacaattggtcaaatgactcaagttgctcatcatatatatgttccaggagggcaattgttgcttaaagacaagagatgaatcattaatttca 101  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  26838651 ataacaattggtcaaatgactcaagttgttcatcatatatatgttccaggagggcaattgttgcttaaagacaagagaagaatgattaatttca 26838558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 10380784 - 10380843
Alignment:
Q  853 acactgacatcgataataatttgaaaaatgatataatttagtgtaatcatatgagtcagtg 913  Q
    ||||||||||| |||||||||||| || | ||||||||||||||||||||| | |||||||    
T  10380784 acactgacatcaataataatttgagaa-taatataatttagtgtaatcataggtgtcagtg 10380843  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 853 - 920
Target Start/End: Complemental strand, 18513305 - 18513237
Alignment:
Q  853 acactgacatcgataataatttga-aaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 920  Q
    |||| |||| |||||||||||||| ||||||| |||||| | |||||||||||| ||||||||||||||    
T  18513305 acacagacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtc 18513237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 849 - 903
Target Start/End: Complemental strand, 25950611 - 25950557
Alignment:
Q  849 atgaacactgacatcgataataatttgaaaaatgatataatttagtgtaatcata 903  Q
    |||||||| |||| ||||||||||||||||||||| ||||||  ||||| |||||    
T  25950611 atgaacaccgacaccgataataatttgaaaaatgacataattctgtgtattcata 25950557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 867 - 903
Target Start/End: Complemental strand, 49659573 - 49659536
Alignment:
Q  867 aataatttga-aaaatgatataatttagtgtaatcata 903  Q
    |||||||||| |||||||||||||||||||||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcata 49659536  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 864 - 903
Target Start/End: Original strand, 23751906 - 23751946
Alignment:
Q  864 gataataatttga-aaaatgatataatttagtgtaatcata 903  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23751906 gataataatttgataaaatgatataatttagtgtaatcata 23751946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 903
Target Start/End: Complemental strand, 29812716 - 29812677
Alignment:
Q  865 ataataatttga-aaaatgatataatttagtgtaatcata 903  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcata 29812677  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 858 - 914
Target Start/End: Original strand, 201501 - 201557
Alignment:
Q  858 gacatcgataataatttgaaaaatgatataatttagtgtaatcatatgagtcagtgt 914  Q
    ||||| |||||| |||||||||| ||||||||||| |||||||| ||| ||||||||    
T  201501 gacattgataattatttgaaaaaggatataatttaatgtaatcacatgtgtcagtgt 201557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 864 - 903
Target Start/End: Original strand, 6389749 - 6389789
Alignment:
Q  864 gataataatttga-aaaatgatataatttagtgtaatcata 903  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  6389749 gataataatttgagaaaatgatataatttagtgtaatcata 6389789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 914
Target Start/End: Complemental strand, 34547257 - 34547208
Alignment:
Q  865 ataataatttgaaaaatgatataatttagtgtaatcatatgagtcagtgt 914  Q
    ||||||||||||||||||| |||||||| |||||||| ||| || |||||    
T  34547257 ataataatttgaaaaatgacataatttaatgtaatcacatgtgtgagtgt 34547208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 858 - 905
Target Start/End: Complemental strand, 2577239 - 2577191
Alignment:
Q  858 gacatcgataataatttga-aaaatgatataatttagtgtaatcatatg 905  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  2577239 gacaccgataataatttgagaaaatgacataatttagtgtaatcatatg 2577191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 853 - 903
Target Start/End: Complemental strand, 39696063 - 39696012
Alignment:
Q  853 acactgacatcgataataatttga-aaaatgatataatttagtgtaatcata 903  Q
    |||| |||| ||| |||||||||| |||||||||||||||||||||||||||    
T  39696063 acaccgacaccgacaataatttgagaaaatgatataatttagtgtaatcata 39696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 903
Target Start/End: Original strand, 43554528 - 43554567
Alignment:
Q  865 ataataatttga-aaaatgatataatttagtgtaatcata 903  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcata 43554567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 853 - 914
Target Start/End: Original strand, 12927649 - 12927711
Alignment:
Q  853 acactgacatcgataataatttga-aaaatgatataatttagtgtaatcatatgagtcagtgt 914  Q
    |||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||||  ||||||||    
T  12927649 acaccgacatcgctaataatttgagaaaatcatataatttagtgtaattatatatgtcagtgt 12927711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 864 - 903
Target Start/End: Original strand, 15864839 - 15864879
Alignment:
Q  864 gataataatttgaaaa-atgatataatttagtgtaatcata 903  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  15864839 gataataatttgaaaaaatgatataatttagtgtaatcata 15864879  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 864 - 903
Target Start/End: Complemental strand, 23354705 - 23354665
Alignment:
Q  864 gataataatttga-aaaatgatataatttagtgtaatcata 903  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23354705 gataataatttgagaaaatgatataatttagtgtaatcata 23354665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 858 - 903
Target Start/End: Original strand, 24011036 - 24011082
Alignment:
Q  858 gacatcgataataatttga-aaaatgatataatttagtgtaatcata 903  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  24011036 gacattgataataatttgagaaaatgacataatttagtgtaatcata 24011082  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 903
Target Start/End: Original strand, 39820436 - 39820475
Alignment:
Q  865 ataataatttga-aaaatgatataatttagtgtaatcata 903  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcata 39820475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 868 - 920
Target Start/End: Original strand, 56932 - 56985
Alignment:
Q  868 ataatttga-aaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 920  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||| |||||    
T  56932 ataatttgagaaaatgatataattcagtgtaatcataagtgtcagtgtcgtgtc 56985  T

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