View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4421-Insertion-4 (Length: 905)

Name: NF4421-Insertion-4
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4421-Insertion-4
NF4421-Insertion-4
[»] chr5 (21 HSPs)
chr5 (225-426)||(26379581-26379788)
chr5 (8-181)||(26379846-26380025)
chr5 (706-808)||(8398777-8398879)
chr5 (706-808)||(36718732-36718833)
chr5 (707-808)||(13423660-13423761)
chr5 (688-808)||(26377939-26378060)
chr5 (707-808)||(12661103-12661204)
chr5 (715-806)||(19099481-19099572)
chr5 (722-808)||(13656023-13656108)
chr5 (707-806)||(13474427-13474524)
chr5 (696-808)||(20975789-20975897)
chr5 (715-808)||(43511442-43511532)
chr5 (811-860)||(5700669-5700718)
chr5 (796-860)||(9751682-9751746)
chr5 (797-896)||(15061792-15061892)
chr5 (808-863)||(5699754-5699810)
chr5 (820-859)||(5984000-5984039)
chr5 (753-808)||(26311851-26311906)
chr5 (798-860)||(26034834-26034896)
chr5 (810-860)||(28819537-28819587)
chr5 (811-860)||(11465891-11465940)
[»] chr8 (29 HSPs)
chr8 (233-392)||(23734664-23734824)
chr8 (707-808)||(7857886-7857985)
chr8 (99-176)||(23734884-23734961)
chr8 (707-808)||(43926487-43926588)
chr8 (695-808)||(44665205-44665318)
chr8 (696-808)||(13585089-13585201)
chr8 (715-806)||(3471401-3471492)
chr8 (714-808)||(18420775-18420869)
chr8 (715-808)||(34524101-34524191)
chr8 (707-808)||(3445482-3445582)
chr8 (707-808)||(18111614-18111715)
chr8 (798-855)||(35862747-35862804)
chr8 (714-798)||(43968243-43968327)
chr8 (707-806)||(42951940-42952039)
chr8 (806-860)||(39513864-39513918)
chr8 (806-863)||(5873684-5873741)
chr8 (807-860)||(37402482-37402535)
chr8 (812-860)||(34375138-34375186)
chr8 (809-860)||(37403465-37403517)
chr8 (706-759)||(5869527-5869580)
chr8 (809-860)||(6819195-6819247)
chr8 (645-688)||(5081018-5081061)
chr8 (797-863)||(5874720-5874787)
chr8 (387-437)||(5081274-5081323)
chr8 (706-760)||(12531359-12531413)
chr8 (807-861)||(28562024-28562078)
chr8 (807-861)||(28567522-28567576)
chr8 (810-860)||(34901503-34901553)
chr8 (808-849)||(40702027-40702068)
[»] chr1 (31 HSPs)
chr1 (706-808)||(48722536-48722638)
chr1 (696-808)||(17487449-17487561)
chr1 (696-806)||(51110268-51110378)
chr1 (707-808)||(20470527-20470628)
chr1 (707-803)||(18128108-18128204)
chr1 (696-801)||(6150494-6150599)
chr1 (707-808)||(33124796-33124897)
chr1 (707-808)||(14084864-14084965)
chr1 (714-806)||(50552300-50552392)
chr1 (707-808)||(12884301-12884402)
chr1 (707-806)||(10109517-10109616)
chr1 (715-800)||(52055357-52055442)
chr1 (801-861)||(49200784-49200844)
chr1 (694-808)||(12971208-12971320)
chr1 (809-860)||(25601924-25601975)
chr1 (809-860)||(49201391-49201442)
chr1 (807-863)||(34933337-34933393)
chr1 (813-860)||(44753302-44753349)
chr1 (799-861)||(32131908-32131970)
chr1 (809-855)||(47024495-47024541)
chr1 (808-860)||(44754608-44754661)
chr1 (807-859)||(22591278-22591330)
chr1 (726-806)||(28189211-28189291)
chr1 (715-806)||(26207184-26207275)
chr1 (809-860)||(40246277-40246328)
chr1 (805-863)||(6225369-6225427)
chr1 (716-806)||(20905455-20905545)
chr1 (807-860)||(25600928-25600982)
chr1 (722-760)||(30005309-30005347)
chr1 (807-860)||(16785720-16785773)
chr1 (808-857)||(24963012-24963061)
[»] chr7 (26 HSPs)
chr7 (696-808)||(42161286-42161398)
chr7 (706-808)||(38524983-38525085)
chr7 (706-808)||(8358458-8358559)
chr7 (696-804)||(27432381-27432489)
chr7 (714-808)||(18015745-18015838)
chr7 (707-808)||(46221867-46221967)
chr7 (714-806)||(33909873-33909965)
chr7 (691-808)||(36796535-36796650)
chr7 (707-808)||(12251551-12251652)
chr7 (734-808)||(4099794-4099868)
chr7 (717-806)||(6380250-6380339)
chr7 (721-808)||(33419282-33419367)
chr7 (809-897)||(23806229-23806317)
chr7 (698-782)||(44894222-44894306)
chr7 (808-863)||(9351130-9351185)
chr7 (753-808)||(11672429-11672484)
chr7 (809-863)||(42202161-42202215)
chr7 (808-863)||(1831982-1832037)
chr7 (715-808)||(26282692-26282782)
chr7 (808-860)||(21237351-21237403)
chr7 (801-857)||(31927632-31927687)
chr7 (808-860)||(33757409-33757461)
chr7 (807-861)||(1830810-1830864)
chr7 (715-806)||(1365833-1365920)
chr7 (808-860)||(5219042-5219095)
chr7 (807-860)||(14554454-14554507)
[»] chr3 (29 HSPs)
chr3 (707-808)||(8363971-8364072)
chr3 (707-808)||(41707219-41707320)
chr3 (694-806)||(21784950-21785061)
chr3 (696-808)||(51939719-51939831)
chr3 (707-808)||(6715250-6715351)
chr3 (707-804)||(23067894-23067990)
chr3 (719-808)||(27110971-27111060)
chr3 (714-808)||(29387918-29388012)
chr3 (707-808)||(46791861-46791962)
chr3 (706-808)||(28132899-28133001)
chr3 (707-808)||(24252418-24252519)
chr3 (707-808)||(51064300-51064399)
chr3 (693-808)||(52655289-52655402)
chr3 (714-808)||(27729933-27730025)
chr3 (694-808)||(48627179-48627290)
chr3 (805-863)||(2305506-2305564)
chr3 (808-861)||(11359456-11359509)
chr3 (715-806)||(23164736-23164827)
chr3 (808-857)||(46207112-46207161)
chr3 (802-863)||(49265294-49265355)
chr3 (809-898)||(11360314-11360405)
chr3 (714-808)||(18407998-18408092)
chr3 (808-860)||(7248864-7248916)
chr3 (808-860)||(18142203-18142255)
chr3 (808-856)||(49263028-49263076)
chr3 (808-855)||(18140939-18140986)
chr3 (809-856)||(41749386-41749433)
chr3 (808-857)||(46207976-46208026)
chr3 (808-858)||(48044736-48044786)
[»] chr2 (25 HSPs)
chr2 (696-808)||(36481194-36481306)
chr2 (707-806)||(13020221-13020319)
chr2 (707-806)||(45618776-45618874)
chr2 (714-808)||(18676475-18676569)
chr2 (719-808)||(25222134-25222223)
chr2 (696-805)||(41096706-41096815)
chr2 (707-806)||(42759915-42760012)
chr2 (707-808)||(6530459-6530559)
chr2 (692-808)||(19367583-19367698)
chr2 (707-806)||(4855789-4855887)
chr2 (706-808)||(7993432-7993533)
chr2 (707-808)||(26151912-26152011)
chr2 (707-804)||(42411725-42411822)
chr2 (715-803)||(2063616-2063702)
chr2 (717-806)||(45042197-45042286)
chr2 (697-808)||(18173089-18173197)
chr2 (715-808)||(15457325-15457414)
chr2 (807-860)||(38528503-38528556)
chr2 (796-859)||(34404597-34404658)
chr2 (809-860)||(44242361-44242412)
chr2 (808-857)||(15481488-15481538)
chr2 (707-808)||(17117787-17117885)
chr2 (805-863)||(20182260-20182318)
chr2 (806-863)||(22116152-22116209)
chr2 (799-863)||(33868465-33868530)
[»] chr4 (26 HSPs)
chr4 (705-808)||(11681907-11682010)
chr4 (705-808)||(11690186-11690289)
chr4 (707-808)||(39372825-39372926)
chr4 (696-808)||(28463752-28463864)
chr4 (707-808)||(19661180-19661280)
chr4 (693-806)||(23256380-23256492)
chr4 (707-808)||(32130953-32131054)
chr4 (707-808)||(53011515-53011615)
chr4 (707-806)||(41038048-41038146)
chr4 (707-808)||(21168856-21168957)
chr4 (715-806)||(29221789-29221880)
chr4 (696-801)||(23426332-23426435)
chr4 (706-804)||(51066754-51066852)
chr4 (707-808)||(44477838-44477938)
chr4 (695-808)||(34982028-34982138)
chr4 (715-759)||(27632209-27632253)
chr4 (809-860)||(24701207-24701258)
chr4 (715-806)||(29579655-29579746)
chr4 (806-860)||(20612963-20613017)
chr4 (810-860)||(9136410-9136460)
chr4 (811-863)||(47765284-47765336)
chr4 (809-860)||(54354196-54354248)
chr4 (811-858)||(12352467-12352514)
chr4 (808-859)||(13128432-13128483)
chr4 (809-860)||(34027200-34027251)
chr4 (766-808)||(45172794-45172835)
[»] scaffold0126 (1 HSPs)
scaffold0126 (707-804)||(16504-16601)
[»] chr6 (21 HSPs)
chr6 (707-806)||(3515017-3515116)
chr6 (707-808)||(6360561-6360661)
chr6 (707-808)||(24455019-24455120)
chr6 (707-808)||(31258621-31258723)
chr6 (695-808)||(2618143-2618256)
chr6 (707-808)||(6754006-6754107)
chr6 (707-787)||(12622145-12622225)
chr6 (718-804)||(57498-57584)
chr6 (723-807)||(7525332-7525416)
chr6 (707-808)||(29400940-29401040)
chr6 (797-863)||(3120337-3120403)
chr6 (797-857)||(22366227-22366287)
chr6 (807-897)||(3119318-3119409)
chr6 (808-896)||(18983973-18984063)
chr6 (807-860)||(30409675-30409728)
chr6 (807-863)||(22365832-22365888)
chr6 (822-896)||(30408601-30408675)
chr6 (807-863)||(6000674-6000730)
chr6 (809-855)||(26469007-26469053)
chr6 (808-861)||(3063488-3063541)
chr6 (808-860)||(18982913-18982966)
[»] scaffold0035 (1 HSPs)
scaffold0035 (714-808)||(22928-23022)
[»] scaffold0181 (1 HSPs)
scaffold0181 (707-805)||(18128-18226)
[»] scaffold0007 (1 HSPs)
scaffold0007 (810-896)||(14830-14918)
[»] scaffold0100 (1 HSPs)
scaffold0100 (715-760)||(46384-46429)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 5e-86; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 225 - 426
Target Start/End: Complemental strand, 26379788 - 26379581
Alignment:
Q  225 gggtttgtttgtggtatttggtgtgagagagag--tgagaaatcgtcaggttgttcctaaaaatcaggagcagagctgcgcgcgaccacttttgctaggt 322  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26379788 gggtttgtttgtggtatttggtgtgagagagagagtgagaaatcgtcaggttgttcctaaaaatcaggagcagagctgcgcgcgaccacttttgctaggt 26379689  T
Q  323 gtgctgttgtgttgtagacatttgcatat-----gaatagggtaacaaatcctctggtcagtcaaaaccaaatttgcaccttattgatcggaattctcta 417  Q
    ||||||||||||||||||||||||| |||     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  26379688 gtgctgttgtgttgtagacatttgcttatgaatagaatagggtaacaaatcctttggtcagtcaaaaccaaatttgcaccttattgatcggaattctc-a 26379590  T
Q  418 acaaactaa 426  Q
    |||||||||    
T  26379589 acaaactaa 26379581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 26380025 - 26379846
Alignment:
Q  8 gaattcaaagggtttgattaattcagaatttgagagatgaaaaggcaacaaaaaagagagagagtgtgcgaatcattagaaagtgtgtgtgt------ca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||      ||    
T  26380025 gaattcaaagggtttgattaattcagaatttgagagatgaaaaggtaacaaacaagagagagagtgtgcgaatcgttagaaagtgtgtgtgtgtgtgtca 26379926  T
Q  102 gtagtagtggtcggtagtgtttgtgtgcgctataacaaaagagccataatgagtgaatcagtgtttttgtttttatttgc 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26379925 gtagtagtggtcggtagtgtttgtgtgcgctataacaaaagagccataatgagtgaatcagtgtttttgtttttatttgc 26379846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 706 - 808
Target Start/End: Original strand, 8398777 - 8398879
Alignment:
Q  706 tttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaa 805  Q
    ||||||| |||||||||||||||| |||||||| ||||||||||||||||||| || |||||||||||||| |||||  ||| |||||||||||||||||    
T  8398777 tttgagggtgtgcaaggtgctcaatcaggccggacctccaaatgctacgggcccctaacgaaaaattaaatctaatactcaccccccacttaaataaaaa 8398876  T
Q  806 ata 808  Q
    |||    
T  8398877 ata 8398879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 706 - 808
Target Start/End: Complemental strand, 36718833 - 36718732
Alignment:
Q  706 tttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaa 805  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| ||||| |||||  | |||||||||||||||||||    
T  36718833 tttgaggatgtgcaaggtgctcaactaggccgggcctccgaatgctacgggtctctaacgaaaaa-taaatctaatactctctccccacttaaataaaaa 36718735  T
Q  806 ata 808  Q
    |||    
T  36718734 ata 36718732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 13423660 - 13423761
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||| | |   |||||||||||||||||    
T  13423660 ttgagggtgtgcaaggtgctcaaccaggcggggcctccaaatgttacgggcctctaacgaaaaattaaatctaatacctatctcccacttaaataaaaaa 13423759  T
Q  807 ta 808  Q
    ||    
T  13423760 ta 13423761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 688 - 808
Target Start/End: Complemental strand, 26378060 - 26377939
Alignment:
Q  688 ctcattagcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaat-atcca 786  Q
    |||||||||||| ||| | |||||| ||||||||||||||||||||| ||||||| ||||| ||||||| |||| |||||||||||||| |||| |||      
T  26378060 ctcattagcaggaccggtcttgagggtgtgcaaggtgctcaaccaggtcgggccttcaaattctacgggtctctaacgaaaaattaaatctaataatcac 26377961  T
Q  787 ctccccacttaaataaaaaata 808  Q
    | ||||||||||||||||||||    
T  26377960 ccccccacttaaataaaaaata 26377939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 12661103 - 12661204
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||| ||||   | ||||||||||| ||||||| || | ||||||||||||||||    
T  12661103 ttgagggtgtgcaaggtgctcaaccagatcgggcctccaaatgctacggacctcaatcaaaaaattaaatctaatatctaccctccacttaaataaaaaa 12661202  T
Q  807 ta 808  Q
    ||    
T  12661203 ta 12661204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 715 - 806
Target Start/End: Complemental strand, 19099572 - 19099481
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||  || ||||||||| | ||||| |||| ||||| ||||||||||||    
T  19099572 gtgcaaggtgctcaaccaggtcgggcctccaaatactacgggcctcaaacaaaaaattaagtctaatacccaccccccatttaaataaaaaa 19099481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 722 - 808
Target Start/End: Original strand, 13656023 - 13656108
Alignment:
Q  722 gtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    |||||||| ||||| |||||||||||| || ||||||||| |||||||||||||| ||||| |||| | ||||||||||||||||||    
T  13656023 gtgctcaatcaggctgggcctccaaatacttcgggcctctaacgaaaaattaaatctaataaccac-ctccacttaaataaaaaata 13656108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 13474427 - 13474524
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||| |||||||| ||| ||||||||| || |||||| | |||||||||||||| |||||  | | ||||||||||||||||||    
T  13474427 ttgagggtgtgcaaggtgcttaaccaggctgggtctccaaatgttatgggcctttaacgaaaaattaaatctaata--ctcaccccacttaaataaaaaa 13474524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 696 - 808
Target Start/End: Original strand, 20975789 - 20975897
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    ||||||||| |||||||  ||||||||||||||| || |||||||||||||| |||| |||||||    |||||||||| | ||||| |||| | |||||    
T  20975789 caggcccgactttgagggagtgcaaggtgctcaatcaagccgggcctccaaaagctatgggcctc---agaaaaattaactctaatacccac-ctccact 20975884  T
Q  796 taaataaaaaata 808  Q
    |||||||||||||    
T  20975885 taaataaaaaata 20975897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 715 - 808
Target Start/End: Original strand, 43511442 - 43511532
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||||||||| || ||||| |||||||| |||| ||||||| ||  ||||||||||| ||||| |||| | ||||||||||||||||||    
T  43511442 gtgcaaggtgctcaatcaagccggacctccaaaagctatgggcctcaga--aaaaattaaatctaatacccac-ctccacttaaataaaaaata 43511532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 811 - 860
Target Start/End: Complemental strand, 5700718 - 5700669
Alignment:
Q  811 gttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||| | ||||||||||||||||||| |||||||||||||||||||    
T  5700718 gttaatagacctttaccccctgcaatataggtcacttttgattttccccc 5700669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 796 - 860
Target Start/End: Complemental strand, 9751746 - 9751682
Alignment:
Q  796 taaataaaaaatagggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||| |||| ||||||||||||| ||||||||||| ||||||| ||||||||| |||| ||||    
T  9751746 taaatataaaaaagggttaataggcttttaccccctgtaatataggtcacttttggttttgcccc 9751682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 797 - 896
Target Start/End: Complemental strand, 15061892 - 15061792
Alignment:
Q  797 aaataaaaaatagggttaataggcatttaccccctgcaatatagatcacttttgatttt-ccccctgttaaannnnnnngttagattccgtccttgtaaa 895  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||  |||||||| |||| |||||||| |||        ||||||||||||||||||||    
T  15061892 aaattaaaaatagggttaataggtctttaccccctgtaatatagggcacttttggttttgccccctgtaaaaaaataaatttagattccgtccttgtaaa 15061793  T
Q  896 a 896  Q
    |    
T  15061792 a 15061792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 808 - 863
Target Start/End: Original strand, 5699754 - 5699810
Alignment:
Q  808 agggttaataggcatttacccc-ctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||| ||||||| ||||    
T  5699754 agggttaataggcttttacccccctgcaatataggtcacttttggttttccctctgt 5699810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 820 - 859
Target Start/End: Complemental strand, 5984039 - 5984000
Alignment:
Q  820 catttaccccctgcaatatagatcacttttgattttcccc 859  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  5984039 catttaccccctgtaatatagagcacttttgattttcccc 5984000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 808
Target Start/End: Original strand, 26311851 - 26311906
Alignment:
Q  753 cgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||| |||||||||||||| ||||| | || ||| ||||||||||||||||    
T  26311851 cgggcctctaacgaaaaattaaatctaatacctacccccaacttaaataaaaaata 26311906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 798 - 860
Target Start/End: Original strand, 26034834 - 26034896
Alignment:
Q  798 aataaaaaatagggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    ||||||||| ||||||||||||  ||||||| ||||||||||| ||| ||||| |||| ||||    
T  26034834 aataaaaaaaagggttaataggtctttaccctctgcaatataggtcatttttggtttttcccc 26034896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 810 - 860
Target Start/End: Original strand, 28819537 - 28819587
Alignment:
Q  810 ggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||| ||||||||||| ||||||| ||||||||| |||| ||||    
T  28819537 ggttaataggcctttaccccctgtaatataggtcacttttggttttgcccc 28819587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 811 - 860
Target Start/End: Original strand, 11465891 - 11465940
Alignment:
Q  811 gttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||| | ||||||||||||||||||  ||||||||| |||||||||    
T  11465891 gttaatagacttttaccccctgcaatatatgtcacttttggttttccccc 11465940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 233 - 392
Target Start/End: Complemental strand, 23734824 - 23734664
Alignment:
Q  233 ttgtggtatttg-gtgtgagagagagtgagaaatcgtcaggttgttcctaaaaatcaggagcagagctgcgcgcgaccacttttgctaggtgtgctgttg 331  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       
T  23734824 ttgtggtattggcgtgagagagagagtgagaaatcgtcaggttgttcctaaaaatcaggagcagagctgcgcgcgaccacttttgctgggtgtgctg--- 23734728  T
Q  332 tgttgtagacatttgcatatg-----aatagggtaacaaatcctctggtcagtcaaaaccaaattt 392  Q
      ||||||||||||||| |||     |||||||||||||||||| |||||||||||||| ||||||    
T  23734727 --ttgtagacatttgcacatgaatataatagggtaacaaatcctttggtcagtcaaaacaaaattt 23734664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 7857886 - 7857985
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||||||||||||||||| |||  ||||||||||||||||||    
T  7857886 ttgagggtgtgcaaggtgctcaaccaggtcgggcctccaattgctacgggcttctaacgaaaaattaaatttaataccca--ccccacttaaataaaaaa 7857983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 23734961 - 23734884
Alignment:
Q  99 tcagtagtagtggtcggtagtgtttgtgtgcgctataacaaaagagccataatgagtgaatcagtgtttttgttttta 176  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  23734961 tcagtagtagtggtcggtagtgtttgtgcgcgctataacaaaagagccatattaagtgaatcagtgtttttgttttta 23734884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 43926588 - 43926487
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||||| |||| |||| |||||||||| |||||||||| | |||||||||||||||||| ||||  |||||||||||||||||    
T  43926588 ttgagggtgtgcaaggtgctcaatcaggtcgggtctccaaatgccacgggcctctaaggaaaaattaaatttaatacccacctcccacttaaataaaaaa 43926489  T
Q  807 ta 808  Q
    ||    
T  43926488 ta 43926487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 695 - 808
Target Start/End: Complemental strand, 44665318 - 44665205
Alignment:
Q  695 gcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccac 794  Q
    ||||||||||  |||||| |||| ||||||||||| || |||||||||||||||||||||||||||| ||| | |||||||| ||||| |||| || |||    
T  44665318 gcaggcccgaccttgagggtgtgtaaggtgctcaatcaagccgggcctccaaatgctacgggcctctaacgcataattaaatctaatacccacccctcac 44665219  T
Q  795 ttaaataaaaaata 808  Q
    ||||||||||||||    
T  44665218 ttaaataaaaaata 44665205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 696 - 808
Target Start/End: Original strand, 13585089 - 13585201
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    |||||||||  || ||| |||||||||||||||| ||| |||||||| ||||||| |||||||||| |||||||||||||| ||||| |||| ||||| |    
T  13585089 caggcccgaccttaagggtgtgcaaggtgctcaatcagaccgggccttcaaatgcaacgggcctctaacgaaaaattaaatctaatacccaccccccatt 13585188  T
Q  796 taaataaaaaata 808  Q
    ||| |||||||||    
T  13585189 taactaaaaaata 13585201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 715 - 806
Target Start/End: Original strand, 3471401 - 3471492
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||  || ||||||||| | ||||| |||| ||||||||||||||||||    
T  3471401 gtgcaagatgctcaaccaggtcggacctccaaatgctacgggcctcaaacaaaaaattaagtgtaatacccaccccccacttaaataaaaaa 3471492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 714 - 808
Target Start/End: Complemental strand, 18420869 - 18420775
Alignment:
Q  714 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||||  ||||| ||| |||||||||||||| ||||||| ||| |||||||||||||| ||||| |||| | ||||||||||||||||||    
T  18420869 tgtgcaaggttttcaactaggtcgggcctccaaatgttacgggcttctaacgaaaaattaaatctaatacccaccctccacttaaataaaaaata 18420775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 715 - 808
Target Start/End: Complemental strand, 34524191 - 34524101
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||||||||| || ||||| |||||||| |||||||||||| ||  ||||||||||| ||||| |||| ||||||||||||||||||||    
T  34524191 gtgcaaggtgctcaatcaagccggacctccaaaagctacgggcctcaga--aaaaattaaatctaatacccac-ccccacttaaataaaaaata 34524101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 3445482 - 3445582
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||  || ||||| || |||||||||||||  ||| ||||| |||||||| ||||| |||| ||||||||||||||||||    
T  3445482 ttgagggtgtgcaaggtgctcaatgagaccgggtcttcaaatgctacgggtttctaacgaagaattaaatctaatacccac-ccccacttaaataaaaaa 3445580  T
Q  807 ta 808  Q
    ||    
T  3445581 ta 3445582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 18111614 - 18111715
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||||| |||| ||| ||||||||||||| ||| ||||  ||||||||||||| ||| | |||| | | ||||||||||||||    
T  18111614 ttgagggtgtgcaaggtgctcaatcaggtcggacctccaaatgctatgggtctctatcgaaaaattaaatctaacacccaccctcaacttaaataaaaaa 18111713  T
Q  807 ta 808  Q
    ||    
T  18111714 ta 18111715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 798 - 855
Target Start/End: Complemental strand, 35862804 - 35862747
Alignment:
Q  798 aataaaaaatagggttaataggcatttaccccctgcaatatagatcacttttgatttt 855  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  35862804 aataaaatttagggttaataggcctttaccccctgcaatatagatcacttttggtttt 35862747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 714 - 798
Target Start/End: Complemental strand, 43968327 - 43968243
Alignment:
Q  714 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaa 798  Q
    |||||||||||||||| ||||  ||||||||||||  ||| ||||||| |||||||||||||| ||||| |||| || |||||||    
T  43968327 tgtgcaaggtgctcaatcaggttgggcctccaaatattacaggcctctaacgaaaaattaaatctaatacccaccccacacttaa 43968243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 42952039 - 42951940
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||| | |||  ||| | || |||||||| |||| |||  ||||||||||||| ||||| |||| ||||||||||||||||||    
T  42952039 ttgagggtgtgcaaggtgctcgatcagttcggacttctaaatgctatgggcttctagcgaaaaattaaatctaatacccaccccccacttaaataaaaaa 42951940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 806 - 860
Target Start/End: Original strand, 39513864 - 39513918
Alignment:
Q  806 atagggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||    
T  39513864 atagggttaataggcatttaccccctgtaatataggtcacttttggttttgcccc 39513918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 806 - 863
Target Start/End: Original strand, 5873684 - 5873741
Alignment:
Q  806 atagggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||||||||||||  |||| |||||||||||||| ||||||||| ||||||||||||    
T  5873684 atagggttaatagggctttaacccctgcaatataggtcacttttggttttccccctgt 5873741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 807 - 860
Target Start/End: Original strand, 37402482 - 37402535
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||| || ||||||||||||||||||| ||||||||| |||||||||    
T  37402482 tagggttaataagcctttaccccctgcaatataggtcacttttggttttccccc 37402535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 812 - 860
Target Start/End: Complemental strand, 34375186 - 34375138
Alignment:
Q  812 ttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||||||    
T  34375186 ttaatagccctttaccccctgtaatatagatcacttttgattttccccc 34375138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 809 - 860
Target Start/End: Complemental strand, 37403517 - 37403465
Alignment:
Q  809 gggttaataggcatttacc-ccctgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  37403517 gggttaataggcatttacctccctgcaatataggtcacttttggttttccccc 37403465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 759
Target Start/End: Complemental strand, 5869580 - 5869527
Alignment:
Q  706 tttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcct 759  Q
    |||||||  ||||||||||||| ||||||||||||||||||||| ||| |||||    
T  5869580 tttgagggagtgcaaggtgctctaccaggccgggcctccaaatggtactggcct 5869527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 809 - 860
Target Start/End: Original strand, 6819195 - 6819247
Alignment:
Q  809 gggttaataggcatttacccc-ctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||| |||||||| ||||||||||| ||||||||| |||||||||    
T  6819195 gggttaataggcctttacccccctgcaatataggtcacttttggttttccccc 6819247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 688
Target Start/End: Complemental strand, 5081061 - 5081018
Alignment:
Q  645 atatgtatcgtagatttctcaaagtaccacgttgataaatactc 688  Q
    |||||||||||| |||||||||||||||||||  ||||||||||    
T  5081061 atatgtatcgtaaatttctcaaagtaccacgtctataaatactc 5081018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 797 - 863
Target Start/End: Complemental strand, 5874787 - 5874720
Alignment:
Q  797 aaataaaaaatagggttaataggcatttacccc-ctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||| |||||||||||||||| | |||||||| ||||||||||| | ||||||| ||| ||||||||    
T  5874787 aaatataaaatagggttaatagacctttaccccgctgcaatataggtgacttttggtttcccccctgt 5874720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 5081323 - 5081274
Alignment:
Q  387 aaatttgcaccttattgatcggaattctctaacaaactaacacttcactct 437  Q
    |||||| |||||||||||||| ||||| | |||||||||||||||||||||    
T  5081323 aaattttcaccttattgatcgaaattccc-aacaaactaacacttcactct 5081274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 706 - 760
Target Start/End: Original strand, 12531359 - 12531413
Alignment:
Q  706 tttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctc 760  Q
    ||||||||  |||||||||||||| || | |||||||||||| ||||||||||||    
T  12531359 tttgaggaaatgcaaggtgctcaatcacgtcgggcctccaaaagctacgggcctc 12531413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 807 - 861
Target Start/End: Complemental strand, 28562078 - 28562024
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccct 861  Q
    ||||||| |||||  |||| |||||| |||||||| |||||||||||||||||||    
T  28562078 tagggtttatagggctttaacccctgtaatatagagcacttttgattttccccct 28562024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 807 - 861
Target Start/End: Complemental strand, 28567576 - 28567522
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccct 861  Q
    ||||||| |||||  |||| |||||| |||||||| |||||||||||||||||||    
T  28567576 tagggtttatagggctttaacccctgtaatatagagcacttttgattttccccct 28567522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 810 - 860
Target Start/End: Original strand, 34901503 - 34901553
Alignment:
Q  810 ggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||| ||||||||||| ||||||| ||||||||| |||| ||||    
T  34901503 ggttaataggcttttaccccctgtaatataggtcacttttggttttgcccc 34901553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 808 - 849
Target Start/End: Complemental strand, 40702068 - 40702027
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcactttt 849  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||    
T  40702068 agggttaataggcctttaccccctgtaatataggtcactttt 40702027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 706 - 808
Target Start/End: Complemental strand, 48722638 - 48722536
Alignment:
Q  706 tttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaa 805  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  48722638 tttgagggtgtgcaaagtgctcaaccaggccgggcctccaaatgctacgggcctctaacgaaaaattaaatttaatatccaccccccacttaaataaaaa 48722539  T
Q  806 ata 808  Q
    |||    
T  48722538 ata 48722536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 696 - 808
Target Start/End: Complemental strand, 17487561 - 17487449
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    |||||||| | |||||| |||||||||| |||||||| |||||||||||||||| ||||||||||| |||||||||||||| ||||| |||| |||||||    
T  17487561 caggcccggtcttgagggtgtgcaaggtcctcaaccaagccgggcctccaaatgatacgggcctctaacgaaaaattaaatctaatacccaccccccact 17487462  T
Q  796 taaataaaaaata 808  Q
    |||||||||||||    
T  17487461 taaataaaaaata 17487449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 696 - 806
Target Start/End: Complemental strand, 51110378 - 51110268
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    |||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||  ||||||    
T  51110378 caggcccgaccttgagggtgtgtaaggtgctcaaccaggccgggcctccaaatgctacgggcctctaacgaaaaattaaatctaatacctaccacccact 51110279  T
Q  796 taaataaaaaa 806  Q
    |||||||||||    
T  51110278 taaataaaaaa 51110268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 20470527 - 20470628
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||| |||| |||||| |||||||||||    
T  20470527 ttgagggtgtgcaaggtgctcaaccaggccggacctacaaatgctacgggcctctaacgaaaaattaaatctaatacccaccccccacataaataaaaaa 20470626  T
Q  807 ta 808  Q
    ||    
T  20470627 ta 20470628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 707 - 803
Target Start/End: Complemental strand, 18128204 - 18128108
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaa 803  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||  |||||||||||||||    
T  18128204 ttgagggtgtgcaaggtgctcaaccaggccgggcctctaaatgctacggacctctaacgaaaaattaaatttaatacccagcccccacttaaataaa 18128108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 696 - 801
Target Start/End: Original strand, 6150494 - 6150599
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    |||||||||  |||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||| ||| |||    
T  6150494 caggcccgaccttgagggtgtgcaaggtgctcaatcaggccgggcttccaaatgctacgggcctctaacgaaaaattaaatctaatacccaccccctact 6150593  T
Q  796 taaata 801  Q
    ||||||    
T  6150594 taaata 6150599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 33124897 - 33124796
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||  ||| ||||||||||||||    
T  33124897 ttgagggtgtgcaaggtgctcaatcaggctgggcctccaaacgctacgggcctctaacgaaaaattaaatttaatacccatccccaacttaaataaaaaa 33124798  T
Q  807 ta 808  Q
    ||    
T  33124797 ta 33124796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 14084965 - 14084864
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||||||||| |||| |||||||||| ||||||||| | |||||||||||||| ||||| |||| | ||||||||||||||||    
T  14084965 ttgagggtgtgcaaggtgctcaaccagaccggacctccaaatgttacgggcctttaacgaaaaattaaatctaatacccaccctccacttaaataaaaaa 14084866  T
Q  807 ta 808  Q
    ||    
T  14084865 ta 14084864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 714 - 806
Target Start/End: Original strand, 50552300 - 50552392
Alignment:
Q  714 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||||||||||||||||| || || |||||||||||| || ||||| |||||||||||||| ||||| |||| ||||||||||||||||||    
T  50552300 tgtgcaaggtgctcaaccagaccaggtctccaaatgctatggacctctaacgaaaaattaaatctaatacccaccccccacttaaataaaaaa 50552392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 12884402 - 12884301
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||| ||||| |||||| ||| |||||||||| ||||||||| ||||| |||||||||||||| |||||||||  ||| ||||||||||||||    
T  12884402 ttgagggtgtgtaaggtactcaactaggtcgggcctccacatgctacggacctctaacgaaaaattaaatctaatatccaacccctacttaaataaaaaa 12884303  T
Q  807 ta 808  Q
    ||    
T  12884302 ta 12884301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 10109517 - 10109616
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||| | |||| ||||  |||| ||||||| |||  |||||||||||||| |||||||||| ||||||||||||||||||    
T  10109517 ttgagggtgtgcaaggtgctcaactaagccgagcctttaaatactacgggtctcaaacgaaaaattaaatctaatatccaccccccacttaaataaaaaa 10109616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 715 - 800
Target Start/End: Original strand, 52055357 - 52055442
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaat 800  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||  |  ||||||||| | ||||| |||||||||||||||||    
T  52055357 gtgcaaggtgctcaaccaggccgagcctccaaatgctatgggtctcaaataaaaaattaagtctaatacccactccccacttaaat 52055442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 801 - 861
Target Start/End: Original strand, 49200784 - 49200844
Alignment:
Q  801 aaaaaatagggttaataggcatttaccccctgcaatatagatcacttttgattttccccct 861  Q
    ||||| |||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  49200784 aaaaattaggattaataggcttttaccccctgcaatataggtcacttttggttttccccct 49200844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 808
Target Start/End: Original strand, 12971208 - 12971320
Alignment:
Q  694 agcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactcccca 793  Q
    ||||| |||||  ||||||  ||||||||||||||| || |||||||||||||  || | ||||||| ||  ||||||||| | ||||| |||| |||||    
T  12971208 agcagacccgaccttgagggagtgcaaggtgctcaatcaagccgggcctccaagagcaatgggcctcaga--aaaaattaactctaatacccacccccca 12971305  T
Q  794 cttaaataaaaaata 808  Q
    |||||||||||||||    
T  12971306 cttaaataaaaaata 12971320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 809 - 860
Target Start/End: Complemental strand, 25601975 - 25601924
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  25601975 gggttaataggcctttaccccctgcaatataggtcacttttggttttccccc 25601924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 809 - 860
Target Start/End: Complemental strand, 49201442 - 49201391
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  49201442 gggttaataggcttttaccccctgcaatataggtcacttttggttttccccc 49201391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 807 - 863
Target Start/End: Complemental strand, 34933393 - 34933337
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||| ||||| || ||||||||||||||||||| ||||||||| ||||||||||||    
T  34933393 tagggataataagcttttaccccctgcaatataggtcacttttggttttccccctgt 34933337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 813 - 860
Target Start/End: Original strand, 44753302 - 44753349
Alignment:
Q  813 taataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  44753302 taataggcttttaccccctgcaatataggtcacttttggttttccccc 44753349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 799 - 861
Target Start/End: Complemental strand, 32131970 - 32131908
Alignment:
Q  799 ataaaaaatagggttaataggcatttaccccctgcaatatagatcacttttgattttccccct 861  Q
    |||||||||||||||||||||  ||||||||||| ||||||| ||||||| | |||| |||||    
T  32131970 ataaaaaatagggttaataggtctttaccccctgtaatataggtcactttcggttttgcccct 32131908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 809 - 855
Target Start/End: Original strand, 47024495 - 47024541
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgatttt 855  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  47024495 gggttaataagcatttactccctgcaatataggtcacttttgatttt 47024541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 808 - 860
Target Start/End: Complemental strand, 44754661 - 44754608
Alignment:
Q  808 agggttaataggcatttaccccc-tgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||| |||||||||    
T  44754661 agggttaataggcctttacccccctgcaatataggtcacttttggttttccccc 44754608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 807 - 859
Target Start/End: Original strand, 22591278 - 22591330
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttcccc 859  Q
    |||||||||||||| |||||||| || ||||||| ||||||||| ||||||||    
T  22591278 tagggttaataggcctttaccccttgtaatataggtcacttttggttttcccc 22591330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 726 - 806
Target Start/End: Original strand, 28189211 - 28189291
Alignment:
Q  726 tcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||||||||  |||| ||||||||||||| |||  || |||||| || | ||||| |||| ||||||||||||||||||    
T  28189211 tcaaccaggccaagccttcaaatgctacgggtctcaaacaaaaaatcaagtctaatacccaccccccacttaaataaaaaa 28189291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 806
Target Start/End: Original strand, 26207184 - 26207275
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    ||||||| |||||||||||| ||||||||||||||||||  |  ||  || ||||||||| | | ||| |||| || |||||||||||||||    
T  26207184 gtgcaagatgctcaaccaggtcgggcctccaaatgctacatgtatcaaacaaaaaattaagtctgatacccaccccacacttaaataaaaaa 26207275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 809 - 860
Target Start/End: Original strand, 40246277 - 40246328
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||||||||||||||| ||||||   |||||||||||| |||||    
T  40246277 gggttaataggcatttaccccctgtaatataacgcacttttgatttcccccc 40246328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 805 - 863
Target Start/End: Complemental strand, 6225427 - 6225369
Alignment:
Q  805 aatagggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    |||| ||||||||||  |||||  |||||||||||| ||||||||| ||||||||||||    
T  6225427 aataaggttaataggtctttacttcctgcaatataggtcacttttggttttccccctgt 6225369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 716 - 806
Target Start/End: Complemental strand, 20905545 - 20905455
Alignment:
Q  716 tgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    ||||||||| |||| |||||||||||||||||||  | ||| |||  || ||||||||| | |||||  ||| ||| ||||||||||||||    
T  20905545 tgcaaggtgatcaatcaggccgggcctccaaatgtcatgggtctcaaacaaaaaattaagtctaatactcacccccgacttaaataaaaaa 20905455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 807 - 860
Target Start/End: Original strand, 25600928 - 25600982
Alignment:
Q  807 tagggttaataggcatttacccc-ctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||||  |||||||| ||||||||||| ||||||||| |||||||||    
T  25600928 tagggttaataggtctttacccctctgcaatataggtcacttttggttttccccc 25600982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 722 - 760
Target Start/End: Complemental strand, 30005347 - 30005309
Alignment:
Q  722 gtgctcaaccaggccgggcctccaaatgctacgggcctc 760  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  30005347 gtgctcaatcaggccgggcctccaaatactacgggcctc 30005309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 860
Target Start/End: Original strand, 16785720 - 16785773
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||||| ||||||||||| ||| ||| ||||||||| |||| ||||    
T  16785720 tagggttaataggcctttaccccctgtaatgtaggtcacttttggttttgcccc 16785773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 808 - 857
Target Start/End: Complemental strand, 24963061 - 24963012
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttcc 857  Q
    ||||||||||||| ||||||||||| ||||||| | | ||||||||||||    
T  24963061 agggttaataggcttttaccccctgtaatataggttatttttgattttcc 24963012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 5e-40; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 696 - 808
Target Start/End: Complemental strand, 42161398 - 42161286
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    |||||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  42161398 caggcccgaccttgagggtgtgcaaggtgctcaaccaggccgagcctccaaatgctacgggcctctaacgaaaaattaaatttaatatcctccccccact 42161299  T
Q  796 taaataaaaaata 808  Q
    |||||||||||||    
T  42161298 taaataaaaaata 42161286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 706 - 808
Target Start/End: Original strand, 38524983 - 38525085
Alignment:
Q  706 tttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaa 805  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||| |||||||||||||||    
T  38524983 tttgagggtgtgcaaggtgctcaaccaggccgggcctccaaatgctacggacctctaacgaaaaattaaatctaatacccactctccacttaaataaaaa 38525082  T
Q  806 ata 808  Q
    |||    
T  38525083 ata 38525085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 706 - 808
Target Start/End: Complemental strand, 8358559 - 8358458
Alignment:
Q  706 tttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaa 805  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| || ||||||||||||||    
T  8358559 tttgagggtgtgcaaggtgctcatccaggccgggcctccaaatgctacgggcctctaacaaaaaattaaatctaatatccac-cctcacttaaataaaaa 8358461  T
Q  806 ata 808  Q
    |||    
T  8358460 ata 8358458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 696 - 804
Target Start/End: Original strand, 27432381 - 27432489
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    |||||||||  |||||| |||| |||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| |||| || ||||    
T  27432381 caggcccgaccttgagggtgtgtaaggtgctcaaccaggcccggccttcaaatgctacgggcctctaacgaaaaattaaatttaatacccaccccacact 27432480  T
Q  796 taaataaaa 804  Q
    |||||||||    
T  27432481 taaataaaa 27432489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 714 - 808
Target Start/End: Complemental strand, 18015838 - 18015745
Alignment:
Q  714 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||    
T  18015838 tgtgcaagatgctcaaccaggccgggcctccaaatgttacgggcctctaacgaaaaattaaatctaatacccac-ccccacttaaataaaaaata 18015745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 46221967 - 46221867
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||| ||| ||||||||||||||    
T  46221967 ttgagggtgtgcaaggtgctcaactaggccgggcctccaaatgctacggacctctaacgaaaaattaaatctaatacccac-ccctacttaaataaaaaa 46221869  T
Q  807 ta 808  Q
    ||    
T  46221868 ta 46221867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 714 - 806
Target Start/End: Original strand, 33909873 - 33909965
Alignment:
Q  714 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| | ||||| |||| || |||||||||||||||    
T  33909873 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctcaaacaaaaaattaagtctaatacccacccctcacttaaataaaaaa 33909965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 691 - 808
Target Start/End: Complemental strand, 36796650 - 36796535
Alignment:
Q  691 attagcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactcc 790  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||| |||||||| ||||| ||||| ||||  |    
T  36796650 attagcaggcccgaccttgaggctgtgcaaggtgctcaaccaggcc-ggcctccaaatactacggacctctaacgaaaaa-taaatctaatacccacctc 36796553  T
Q  791 ccacttaaataaaaaata 808  Q
    ||| ||||||||||||||    
T  36796552 ccatttaaataaaaaata 36796535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 12251652 - 12251551
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||| ||||| |||||||| ||||||||||||||| ||||||  | ||||||||||| ||||| |||| | ||||||||||||||||    
T  12251652 ttgagggtgtgcaaggtactcaatcaggccggacctccaaatgctacgagcctctatcaaaaaattaaatctaatacccaccctccacttaaataaaaaa 12251553  T
Q  807 ta 808  Q
    ||    
T  12251552 ta 12251551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 734 - 808
Target Start/End: Original strand, 4099794 - 4099868
Alignment:
Q  734 gccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||| ||||  |||||||||||||||||||    
T  4099794 gccgggtctccaaatgctacgggcttctaacgaaaaattaaatttaatacccacctcccacttaaataaaaaata 4099868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 717 - 806
Target Start/End: Complemental strand, 6380339 - 6380250
Alignment:
Q  717 gcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||||||| ||||||||||||||||||||| | || ||||||  || ||||||||| | |||||||||||||| ||||||||||||||    
T  6380339 gcaaggtgcttaaccaggccgggcctccaaataccacaggcctcaaacaaaaaattaagtctaatatccactccctacttaaataaaaaa 6380250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 721 - 808
Target Start/End: Complemental strand, 33419367 - 33419282
Alignment:
Q  721 ggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||||||||||||| ||||||||  ||||| ||||| |||||||||||||| ||||| |||  ||||||||||||||||||||    
T  33419367 ggtgctcaaccaggccgggtctccaaatattacggtcctctaacgaaaaattaaatctaataacca--ccccacttaaataaaaaata 33419282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 809 - 897
Target Start/End: Original strand, 23806229 - 23806317
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgttaaannnnnnngttagattccgtccttgtaaaaa 897  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||       || ||||| ||||||||||||||    
T  23806229 gggttaataggcttttaccccctgcaatataggtcacttttgatttttcccctgtaaaatttttttgtcagatttcgtccttgtaaaaa 23806317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 698 - 782
Target Start/End: Complemental strand, 44894306 - 44894222
Alignment:
Q  698 ggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaata 782  Q
    |||||||  |||||||||| |||| |||||||||||| ||||||||||||||||||||  |||| |  ||||||||||| |||||    
T  44894306 ggcccgaccttgaggatgtacaagatgctcaaccaggtcgggcctccaaatgctacggatctctaagaaaaaattaaatctaata 44894222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 808 - 863
Target Start/End: Original strand, 9351130 - 9351185
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||||||||||| |||| |||||||||||||||||||||||| ||||||| ||||    
T  9351130 agggttaataggcttttatcccctgcaatatagatcacttttggttttccctctgt 9351185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 753 - 808
Target Start/End: Original strand, 11672429 - 11672484
Alignment:
Q  753 cgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||| | |||||||||||||| |||||||||| ||||||||||||||||||||    
T  11672429 cgggcctttaacgaaaaattaaatctaatatccaccccccacttaaataaaaaata 11672484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 809 - 863
Target Start/End: Original strand, 42202161 - 42202215
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||    
T  42202161 gggttaataggtctttaccccctgcaatataggtcacttttgatttcccccctgt 42202215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 808 - 863
Target Start/End: Complemental strand, 1832037 - 1831982
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||||||||||  ||||||||||| |||||||  |||||||||||||||||||||    
T  1832037 agggttaatagggctttaccccctgtaatatagggcacttttgattttccccctgt 1831982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 715 - 808
Target Start/End: Complemental strand, 26282782 - 26282692
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||| ||||| || |||||||||||||| ||||  |||||| ||  ||||||||| | ||||| |||| ||||||||||||||||||||    
T  26282782 gtgcaaggtactcaatcaagccgggcctccaaaagctataggcctcaga--aaaaattaactctaatacccac-ccccacttaaataaaaaata 26282692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 808 - 860
Target Start/End: Complemental strand, 21237403 - 21237351
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||||||||||||||||  ||||||| ||||||||| |||| ||||    
T  21237403 agggttaataggcatttaccccctataatataggtcacttttggttttgcccc 21237351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 801 - 857
Target Start/End: Original strand, 31927632 - 31927687
Alignment:
Q  801 aaaaaatagggttaataggcatttaccccctgcaatatagatcacttttgattttcc 857  Q
    ||||| |||||||||||||| ||||| || |||||||||| ||||||||||||||||    
T  31927632 aaaaattagggttaataggcttttacgcc-tgcaatataggtcacttttgattttcc 31927687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 808 - 860
Target Start/End: Original strand, 33757409 - 33757461
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||   ||||||||||| ||||||| |||||||||||||||||||    
T  33757409 agggttaatagatctttaccccctgtaatataggtcacttttgattttccccc 33757461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 807 - 861
Target Start/End: Original strand, 1830810 - 1830864
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccct 861  Q
    |||||||||||||  ||||||||||| |||||||   ||||||||||||||||||    
T  1830810 tagggttaatagggctttaccccctgtaatataggatacttttgattttccccct 1830864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 806
Target Start/End: Original strand, 1365833 - 1365920
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    ||||||||||||||| || ||||||||||||||  ||| ||||||| ||  ||||||||| | ||||| |||  ||||||||||||| ||||    
T  1365833 gtgcaaggtgctcaatcaagccgggcctccaaaatctatgggcctccga--aaaaattaactctaataccca--ccccacttaaatataaaa 1365920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 808 - 860
Target Start/End: Complemental strand, 5219095 - 5219042
Alignment:
Q  808 agggttaataggcatttaccccc-tgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||||| ||||||||| || ||||||| |||||||||||||| ||||    
T  5219095 agggttaataggcctttacccccctgtaatataggtcacttttgattttgcccc 5219042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 860
Target Start/End: Complemental strand, 14554507 - 14554454
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||||| ||||||||||| ||||||| ||| ||||  |||||||||    
T  14554507 tagggttaataggcctttaccccctgtaatataggtcattttttgttttccccc 14554454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 3e-38; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 8363971 - 8364072
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  8363971 ttgagggtgtgcaaggtgctcaaccaggccgggcctccaattgctacgggcctctaacgaaaaattaaatctaatatccaccccccacttaaataaaaaa 8364070  T
Q  807 ta 808  Q
    ||    
T  8364071 ta 8364072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 41707320 - 41707219
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  41707320 ttgagggtgtgcaaggtgttcaaccaggccgggcctccaaatgctacgggcctctaacgaaaaattaaatttaatacccaccccccacttaaataaaaaa 41707221  T
Q  807 ta 808  Q
    ||    
T  41707220 ta 41707219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 21785061 - 21784950
Alignment:
Q  694 agcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactcccca 793  Q
    ||||||||||  ||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||| |||||| ||| |||||    
T  21785061 agcaggcccggctttgagggtgtgcaaggtgcttaaccaggccgggcctcccaatgctacgggtctctaacgaaaaattaaatctaatattcac-cccca 21784963  T
Q  794 cttaaataaaaaa 806  Q
    |||||||||||||    
T  21784962 cttaaataaaaaa 21784950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 696 - 808
Target Start/End: Complemental strand, 51939831 - 51939719
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    |||||||||  |||||| |||||||||||||||||||||| |||||||||||| ||| |||||||| || ||||||||||| ||||| |||| |||||||    
T  51939831 caggcccgaccttgagggtgtgcaaggtgctcaaccaggcggggcctccaaattctatgggcctctaacaaaaaattaaatctaatacccaccccccact 51939732  T
Q  796 taaataaaaaata 808  Q
    |||||||||||||    
T  51939731 taaataaaaaata 51939719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 6715250 - 6715351
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| |||| | ||| ||||||||||||    
T  6715250 ttgagggtgtgcaaggtgctcaaccaggccgagcctctaaatgttacgggcctctaacgaaaaattaaatttaatacccaccctccatttaaataaaaaa 6715349  T
Q  807 ta 808  Q
    ||    
T  6715350 ta 6715351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 707 - 804
Target Start/End: Complemental strand, 23067990 - 23067894
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaa 804  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| ||||| ||||||||||    
T  23067990 ttgagggtgtgcaaggtgctcaaccaggccgggcctccaattgctacggacctctaacgaaaaattaaatttaatacccac-ccccatttaaataaaa 23067894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 719 - 808
Target Start/End: Complemental strand, 27111060 - 27110971
Alignment:
Q  719 aaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||| ||||||||||||||||    
T  27111060 aaggtgctcaaccaggcggggcctccaaatgctacgggcctctaacgaaaaattaaatctaatacccaccccctacttaaataaaaaata 27110971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 714 - 808
Target Start/End: Complemental strand, 29388012 - 29387918
Alignment:
Q  714 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||||||||||||||||||| ||| ||||||||||| || ||| |||||||||||||| ||||| |||| ||||||||||||||||||||    
T  29388012 tgtgcaaggtgctcaaccaggccggaccttcaaatgctacgagcttctaacgaaaaattaaatctaatacccaccccccacttaaataaaaaata 29387918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 46791962 - 46791861
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||| ||| | | |||||||||||||||||||| ||||| |||||||||||||| ||||| |||| ||||||||||||||||||    
T  46791962 ttgagggtgtgcaaggtgcttaactaagtcgggcctccaaatgctacggacctctaacgaaaaattaaatctaatacccaccccccacttaaataaaaaa 46791863  T
Q  807 ta 808  Q
    ||    
T  46791862 ta 46791861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 706 - 808
Target Start/End: Complemental strand, 28133001 - 28132899
Alignment:
Q  706 tttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaa 805  Q
    ||||||| ||||||||||||||||||||  ||||||| |||||| ||||||||| | |||||||||||||| ||||| |||| ||||| |||| ||||||    
T  28133001 tttgagggtgtgcaaggtgctcaaccagatcgggccttcaaatgttacgggcctttaacgaaaaattaaatataatacccaccccccatttaactaaaaa 28132902  T
Q  806 ata 808  Q
    |||    
T  28132901 ata 28132899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 24252418 - 24252519
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||| ||||||||||||||| ||||||||||||||| ||||||||||| || |||||||| || ||||| |||| ||| |||||| |||||||    
T  24252418 ttgagggtgtgtaaggtgctcaaccagaccgggcctccaaatgttacgggcctctaactaaaaattagatctaatacccacccccgacttaagtaaaaaa 24252517  T
Q  807 ta 808  Q
    ||    
T  24252518 ta 24252519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 51064300 - 51064399
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||| |||| |||||||||| ||||||| |||||| ||||| |||||||||||||| ||||| ||| |  ||||||||||||||||    
T  51064300 ttgagggtgtgcaaggtgttcaatcaggccgggcttccaaatactacggacctctaacgaaaaattaaatctaatacccatt--ccacttaaataaaaaa 51064397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 693 - 808
Target Start/End: Complemental strand, 52655402 - 52655289
Alignment:
Q  693 tagcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactcccc 792  Q
    ||||||||||||  |||||| ||||||||||||| ||||||||||||||| |||||| || |||||||| || ||||||||||| ||||  |||| |||     
T  52655402 tagcaggcccgaccttgagggtgtgcaaggtgcttaaccaggccgggcct-caaatgttatgggcctctaac-aaaaattaaatctaatccccaccccct 52655305  T
Q  793 acttaaataaaaaata 808  Q
    || |||||||||||||    
T  52655304 acataaataaaaaata 52655289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 714 - 808
Target Start/End: Complemental strand, 27730025 - 27729933
Alignment:
Q  714 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    |||||||| ||||||| |||| ||| |||||||||| ||||||||||| |||||||||||||| |||||  |   ||||||||||||||||||||    
T  27730025 tgtgcaagatgctcaatcaggtcggacctccaaatggtacgggcctctaacgaaaaattaaatataata--cgtaccccacttaaataaaaaata 27729933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 694 - 808
Target Start/End: Complemental strand, 48627290 - 48627179
Alignment:
Q  694 agcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactcccca 793  Q
    |||||||||||  ||||||  ||||||||||||||| || |||||||||||||| |||| |||||||  |  ||||||||| | ||||| |||| |||||    
T  48627290 agcaggcccgaccttgagggggtgcaaggtgctcaatcaagccgggcctccaaaagctatgggcctc--ataaaaaattaactctaatacccac-cccca 48627194  T
Q  794 cttaaataaaaaata 808  Q
    |||||||||||||||    
T  48627193 cttaaataaaaaata 48627179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 805 - 863
Target Start/End: Complemental strand, 2305564 - 2305506
Alignment:
Q  805 aatagggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||    
T  2305564 aatagggttaataagcctttaccccctgcaatataggtcacttttggttttccccctgt 2305506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 808 - 861
Target Start/End: Original strand, 11359456 - 11359509
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttccccct 861  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  11359456 agggttaataggcctttaccccctgcaatataggtcacttttggttttccccct 11359509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 715 - 806
Target Start/End: Complemental strand, 23164827 - 23164736
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||||||| ||||||||| ||||||||||||||| | |||||||  || ||||||||  | ||||| |||| || |||||||||||||||    
T  23164827 gtgcaaggtgttcaaccaggtcgggcctccaaatgccatgggcctcaaacaaaaaattatgtctaatacccacccctcacttaaataaaaaa 23164736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 808 - 857
Target Start/End: Original strand, 46207112 - 46207161
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttcc 857  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||||    
T  46207112 agggttaatagacatttatcccctgcaatataggtcacttttgattttcc 46207161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 802 - 863
Target Start/End: Complemental strand, 49265355 - 49265294
Alignment:
Q  802 aaaaatagggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||| ||||||||||||||||||| | ||| ||||||| ||||||||| ||||||||||||    
T  49265355 aaaaaaagggttaataggcatttactctctgtaatataggtcacttttggttttccccctgt 49265294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 809 - 898
Target Start/End: Complemental strand, 11360405 - 11360314
Alignment:
Q  809 gggttaataggcatttaccccc-tgcaatatagatcacttttgatttt-ccccctgttaaannnnnnngttagattccgtccttgtaaaaaa 898  Q
    |||||||||||| ||||||||| |||||||||| ||||||||| |||| |||||||| |||        |||||||||||||||||||||||    
T  11360405 gggttaataggcctttacccccctgcaatataggtcacttttggttttcccccctgtaaaatttttcttttagattccgtccttgtaaaaaa 11360314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 714 - 808
Target Start/End: Original strand, 18407998 - 18408092
Alignment:
Q  714 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    |||| |||||| ||||  ||||||||||| ||| ||||||||  || | |||||||||||||| ||||| ||||   ||||||||||||||||||    
T  18407998 tgtgtaaggtgttcaattaggccgggccttcaattgctacggatctttaacgaaaaattaaatataatacccaccttccacttaaataaaaaata 18408092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 808 - 860
Target Start/End: Original strand, 7248864 - 7248916
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||| |||| ||||    
T  7248864 agggttaataggcctttaccccctgtaatatagatcatttttggttttgcccc 7248916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 808 - 860
Target Start/End: Complemental strand, 18142255 - 18142203
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||| |||| ||||    
T  18142255 agggttaataggcctttaccccctgtaatataggtcacttttggttttgcccc 18142203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 808 - 856
Target Start/End: Original strand, 49263028 - 49263076
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttc 856  Q
    ||||||||||||  ||||||||||  |||||||||||||||||||||||    
T  49263028 agggttaataggtctttaccccctataatatagatcacttttgattttc 49263076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 808 - 855
Target Start/End: Original strand, 18140939 - 18140986
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgatttt 855  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||| ||||    
T  18140939 agggttaataggcctttaccccctgtaatataggtcacttttggtttt 18140986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 809 - 856
Target Start/End: Original strand, 41749386 - 41749433
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgattttc 856  Q
    |||||||||||| |||||||| || ||||||| |||||||||||||||    
T  41749386 gggttaataggcctttaccccttgtaatataggtcacttttgattttc 41749433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 808 - 857
Target Start/End: Complemental strand, 46208026 - 46207976
Alignment:
Q  808 agggttaataggcatttaccc-cctgcaatatagatcacttttgattttcc 857  Q
    |||||||||| || ||||||| |||||||||||| ||||||||||||||||    
T  46208026 agggttaataagcctttaccctcctgcaatataggtcacttttgattttcc 46207976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 808 - 858
Target Start/End: Complemental strand, 48044786 - 48044736
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttccc 858  Q
    ||||||||||||| ||||||||||||||||||  ||| ||||| |||||||    
T  48044786 agggttaataggcttttaccccctgcaatataagtcatttttggttttccc 48044736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 1e-37; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 696 - 808
Target Start/End: Original strand, 36481194 - 36481306
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    |||||||| | |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||    
T  36481194 caggcccggtcttgagggtgtgcaaggtgctcaaccaggccggacctccaaatgctacgggcctctaacgaaaaattaaatctaatacccaccccccact 36481293  T
Q  796 taaataaaaaata 808  Q
    |||||||||||||    
T  36481294 taaataaaaaata 36481306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 13020221 - 13020319
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  13020221 ttgagggtgtgcaaggtgctcaaccagggcgggcctccaattgctacgggcctctaacgaaaaattaaatttaatacccac-ccccacttaaataaaaaa 13020319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 45618776 - 45618874
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||| ||||| ||||||||||||    
T  45618776 ttgagggtgtgcaaggtgctcagccaggccgggcctccaaatgctacgggcctctaacgaaaaa-taaatctaatacccaccccccatttaaataaaaaa 45618874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 714 - 808
Target Start/End: Complemental strand, 18676569 - 18676475
Alignment:
Q  714 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||| ||||| |||| || |||||||||||||||||    
T  18676569 tgtgcaaggtgctcaaccaggccgggcatccaaatgctacgggtttctaacgaaaaattaaatctaatacccacccctcacttaaataaaaaata 18676475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 719 - 808
Target Start/End: Original strand, 25222134 - 25222223
Alignment:
Q  719 aaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||  || ||||||||||||||||    
T  25222134 aaggtgctcaaccaggccgggcctccaaatgctacgggcctctaacgaaaaattaaatctaataccgaccgcctacttaaataaaaaata 25222223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 696 - 805
Target Start/End: Complemental strand, 41096815 - 41096706
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    |||||||||  |||| | |||||||||| ||||| |||||||| |||| |||||||||||| |||| |||||||||||||||||||| |||| |||||||    
T  41096815 caggcccgaccttgaaggtgtgcaaggtactcaatcaggccggacctctaaatgctacgggtctctaacgaaaaattaaatttaatacccaccccccact 41096716  T
Q  796 taaataaaaa 805  Q
    ||||||||||    
T  41096715 taaataaaaa 41096706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 42760012 - 42759915
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||| ||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||  ||||||||||||||||||    
T  42760012 ttgagggtgtacaaggtgctcaactaggtcgggcctccaaatgctacaggcctctaacgaaaaattaaatctaatatcca--ccccacttaaataaaaaa 42759915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 6530459 - 6530559
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||| |||||||||||| || |||| |||| ||||| ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  6530459 ttgagggtgtgtaaggtgctcaacgagaccggacctctaaatgatacgggcctctaacgaaaaattaaatctaatatccac-ccccacttaaataaaaaa 6530557  T
Q  807 ta 808  Q
    ||    
T  6530558 ta 6530559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 692 - 808
Target Start/End: Complemental strand, 19367698 - 19367583
Alignment:
Q  692 ttagcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccc 791  Q
    ||||||| ||||  ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||| ||||| | |  |||    
T  19367698 ttagcagacccggctttgagggtgtgcaaggtgctcaaccaggtcgggcctccaaatgctacgggtctctaacg-aaaattaaatctaatacctatcccc 19367600  T
Q  792 cacttaaataaaaaata 808  Q
    || ||||||||||||||    
T  19367599 catttaaataaaaaata 19367583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 4855789 - 4855887
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||| ||||| |||| | ||| ||||||||||||    
T  4855789 ttgagggtgtgcaaggtgctcaaccaggccggacctccaaattctacgggcctctaacgaaaaa-taaatctaatacccaccctccatttaaataaaaaa 4855887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 706 - 808
Target Start/End: Original strand, 7993432 - 7993533
Alignment:
Q  706 tttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaa 805  Q
    ||||||| |||||||||||||||| | | ||||||||||||||||||| | ||||| |||||||||||||||||||| |||| ||| | |||||||||||    
T  7993432 tttgagggtgtgcaaggtgctcaatctgaccgggcctccaaatgctacag-cctctaacgaaaaattaaatttaatacccaccccctatttaaataaaaa 7993530  T
Q  806 ata 808  Q
    |||    
T  7993531 ata 7993533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 26152011 - 26151912
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||||||| |||| |||||||| ||||| ||||| |||| ||||| ||||||||||||    
T  26152011 ttgagggtgtgcaagatgctcaaccaggtcgggcctccaaatgctacgggtctctaacgaaaaa-taaatctaatacccac-ccccatttaaataaaaaa 26151914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 707 - 804
Target Start/End: Complemental strand, 42411822 - 42411725
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaa 804  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||| | |||||| |||||||||||||| ||||| |||  ||||||||||| ||||    
T  42411822 ttgagggtgtgcaaggtgctcaatcaggccgggcctccaattgctaagagcctctaacgaaaaattaaatctaatacccaacccccacttaaaaaaaa 42411725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 715 - 803
Target Start/End: Original strand, 2063616 - 2063702
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaa 803  Q
    |||||||||| |||||||| |||||||||||||| |||||||||||  || ||||||||| | ||||| |||  |||||||||||||||    
T  2063616 gtgcaaggtgttcaaccagaccgggcctccaaatactacgggcctcaaacaaaaaattaagtctaataccca--ccccacttaaataaa 2063702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 717 - 806
Target Start/End: Original strand, 45042197 - 45042286
Alignment:
Q  717 gcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    ||||||||||||| |||| |||||||||||||| || |||||||  || ||||||||| | ||||| |||||||  | ||||||||||||    
T  45042197 gcaaggtgctcaatcaggtcgggcctccaaatgttatgggcctcaaacaaaaaattaagtctaatacccactccttatttaaataaaaaa 45042286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 697 - 808
Target Start/End: Complemental strand, 18173197 - 18173089
Alignment:
Q  697 aggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccactt 796  Q
    |||||||  |||||||  ||||||||||||||| || |||||||||||||  |||| || |||| ||  ||||||||| | ||||| |||| ||||||||    
T  18173197 aggcccggctttgagggagtgcaaggtgctcaatcaagccgggcctccaagagctatggacctcaga--aaaaattaactctaatacccac-ccccactt 18173101  T
Q  797 aaataaaaaata 808  Q
    ||||||||||||    
T  18173100 aaataaaaaata 18173089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 715 - 808
Target Start/End: Original strand, 15457325 - 15457414
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||||||||| || |||||||||||||| | || |||||||    |||||||||| | ||||| |||| ||||||||||||||||||||    
T  15457325 gtgcaaggtgctcaatcaagccgggcctccaaaagttatgggcctc---agaaaaattaactctaatacccac-ccccacttaaataaaaaata 15457414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 807 - 860
Target Start/End: Original strand, 38528503 - 38528556
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||||| |||||| ||||||||||| |||||||||| |||| ||||    
T  38528503 tagggttaataggcctttacctcctgcaatatatatcacttttggttttgcccc 38528556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 796 - 859
Target Start/End: Complemental strand, 34404658 - 34404597
Alignment:
Q  796 taaataaaaaatagggttaataggcatttaccccctgcaatatagatcacttttgattttcccc 859  Q
    ||||||||||||  ||||||||||| ||||||||||| ||||||  ||||||||| ||||||||    
T  34404658 taaataaaaaat--ggttaataggcttttaccccctgtaatatatgtcacttttggttttcccc 34404597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 809 - 860
Target Start/End: Complemental strand, 44242412 - 44242361
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||| |||||| |||| ||||||||||||||||| |||| ||||    
T  44242412 gggttaataggcctttacctcctgtaatatagatcacttttggttttgcccc 44242361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 808 - 857
Target Start/End: Original strand, 15481488 - 15481538
Alignment:
Q  808 agggttaataggcattta-ccccctgcaatatagatcacttttgattttcc 857  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||| ||||||    
T  15481488 agggttaataggcctttatccccctgcaatataggtcacttttggttttcc 15481538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 17117885 - 17117787
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    ||||||| ||| ||||||||||| || ||||| ||||||||  ||| ||||| |  || ||||||||||| |||||  ||| ||||||||||||||||||    
T  17117885 ttgaggaagtgtaaggtgctcaatcaagccggacctccaaaaactatgggcccc--acaaaaaattaaatctaatactcac-ccccacttaaataaaaaa 17117789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 805 - 863
Target Start/End: Original strand, 20182260 - 20182318
Alignment:
Q  805 aatagggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    |||||||||||||||  |||| |||||| ||||||| ||| ||| ||||||||||||||    
T  20182260 aatagggttaataggtttttatcccctgtaatataggtcattttcgattttccccctgt 20182318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 806 - 863
Target Start/End: Original strand, 22116152 - 22116209
Alignment:
Q  806 atagggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||||||||||||  ||||||||||| ||||||| ||| ||| | ||||||||||||    
T  22116152 atagggttaataggtctttaccccctgtaatataggtcattttcggttttccccctgt 22116209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 799 - 863
Target Start/End: Original strand, 33868465 - 33868530
Alignment:
Q  799 ataaaaaatagggttaataggcatttaccc-cctgcaatatagatcacttttgattttccccctgt 863  Q
    |||||| ||||||||||||||  |||| || |||| ||||||| |||||||| |||||||||||||    
T  33868465 ataaaatatagggttaataggtctttatcctcctgtaatataggtcacttttaattttccccctgt 33868530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 705 - 808
Target Start/End: Complemental strand, 11682010 - 11681907
Alignment:
Q  705 ttttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaa 804  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| |||| ||||||||||||||||    
T  11682010 ttttgagggtgtgcaaggtgctcaaccaggccgggccttcaaatgctacgagcctctaacgaaaaattaaatctaatacccaccccccacttaaataaaa 11681911  T
Q  805 aata 808  Q
    ||||    
T  11681910 aata 11681907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 705 - 808
Target Start/End: Complemental strand, 11690289 - 11690186
Alignment:
Q  705 ttttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaa 804  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| |||| ||||||||||||||||    
T  11690289 ttttgagggtgtgcaaggtgctcaaccaggccgggccttcaaatgctacgagcctctaacgaaaaattaaatctaatacccaccccccacttaaataaaa 11690190  T
Q  805 aata 808  Q
    ||||    
T  11690189 aata 11690186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 39372926 - 39372825
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||| |||||||||| | ||||||||||||||||    
T  39372926 ttgagggtgtgcaaggtgctcaaccaggccggacctccaaattctacgggcctttaacgaaaaattaaatctaatatccacccgccacttaaataaaaaa 39372827  T
Q  807 ta 808  Q
    ||    
T  39372826 ta 39372825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 696 - 808
Target Start/End: Complemental strand, 28463864 - 28463752
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    ||||||||  ||||| | ||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||    
T  28463864 caggcccggctttgaaggtgtgcaaggtgttcaatcaggccggacctccaaatgctacgggcctctaacgaaaaattaaatctaatacccaccccccact 28463765  T
Q  796 taaataaaaaata 808  Q
    |||||||||||||    
T  28463764 taaataaaaaata 28463752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 19661180 - 19661280
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||| ||| |||| |||||||||||||||||||| |||  ||||||||||||||||||    
T  19661180 ttgagggtgtgcaaggtgctcaaccaggc-gggccttcaaatgctatgggtctctaacgaaaaattaaatttaatacccatcccccacttaaataaaaaa 19661278  T
Q  807 ta 808  Q
    ||    
T  19661279 ta 19661280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 693 - 806
Target Start/End: Original strand, 23256380 - 23256492
Alignment:
Q  693 tagcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactcccc 792  Q
    |||||||||||||||||||| |||||||||||||||| |||||||  |||||||||| || ||| || | |||||||||||||| |||||||||| ||||    
T  23256380 tagcaggcccgattttgagggtgtgcaaggtgctcaatcaggccgaacctccaaatgttatgggtctttaacgaaaaattaaatataatatccac-cccc 23256478  T
Q  793 acttaaataaaaaa 806  Q
    ||||||| ||||||    
T  23256479 acttaaacaaaaaa 23256492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 32131054 - 32130953
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||| |||||| |||||||||| |||||||||||||||||| || ||| |||||||||||||| ||||| |||| ||||||||||||||||||    
T  32131054 ttgagggtgtgtaaggtgttcaaccaggctgggcctccaaatgctacgagcttctcacgaaaaattaaatctaatacccaccccccacttaaataaaaaa 32130955  T
Q  807 ta 808  Q
    ||    
T  32130954 ta 32130953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 53011515 - 53011615
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||| ||||| |||  ||||| ||||||||||||    
T  53011515 ttgagggtgtgcaaggtgctcaaccagaccgg-cctccaaatgctacgggcctctaacgaaaaattaaatctaatacccatcccccatttaaataaaaaa 53011613  T
Q  807 ta 808  Q
    ||    
T  53011614 ta 53011615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 41038048 - 41038146
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||| ||||||||||||||||||||||||||| ||| || |||| |||||||||||||| |||||||||| ||||| ||||||||||||    
T  41038048 ttgagggtgtgcaagatgctcaaccaggccgggcctccaaatgatac-ggtctctaacgaaaaattaaatctaatatccaccccccatttaaataaaaaa 41038146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 21168856 - 21168957
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| | |||||||||||||||||||||||  ||||||||| ||||||||||| |||||||||||||| ||||  |||| || |||||||||||||||    
T  21168856 ttgagggtatgcaaggtgctcaaccaggccggatctccaaatgatacgggcctctaacgaaaaattaaatctaatgcccaccccacacttaaataaaaaa 21168955  T
Q  807 ta 808  Q
    ||    
T  21168956 ta 21168957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 715 - 806
Target Start/End: Complemental strand, 29221880 - 29221789
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    ||||||||||||||||| | | |||||||||||||| | |||||||  || ||||||||| ||||||| |||| ||||||||||||||||||    
T  29221880 gtgcaaggtgctcaaccggactgggcctccaaatgccatgggcctcaaacaaaaaattaagtttaatacccaccccccacttaaataaaaaa 29221789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 696 - 801
Target Start/End: Complemental strand, 23426435 - 23426332
Alignment:
Q  696 caggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccact 795  Q
    |||||||||  |||||||||  ||||||||||||| |||| || |||| |||| |||||||||||| |||||||||||||| ||||| |||| ||| |||    
T  23426435 caggcccgaccttgaggatg--caaggtgctcaactaggctggacctcgaaatactacgggcctctaacgaaaaattaaatctaatacccaccccctact 23426338  T
Q  796 taaata 801  Q
    ||||||    
T  23426337 taaata 23426332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 706 - 804
Target Start/End: Complemental strand, 51066852 - 51066754
Alignment:
Q  706 tttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaa 804  Q
    |||||||  ||||||||| ||| |||||||||| |||| ||||| ||||||||||  || ||||||||| | |||||||||||||||| ||||||||||    
T  51066852 tttgagggagtgcaaggttctctaccaggccggacctctaaatgttacgggcctcaaacaaaaaattaagtctaatatccactccccatttaaataaaa 51066754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 44477838 - 44477938
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||| |||||| ||||||||| |||||||||||||  ||||| ||||| |||||||| ||||| |||||||||| || || ||||||||||||    
T  44477838 ttgagggtgtgtaaggtgttcaaccaggtcgggcctccaaatattacggacctctaacgaaaaa-taaatctaatatccacccctcatttaaataaaaaa 44477936  T
Q  807 ta 808  Q
    ||    
T  44477937 ta 44477938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 695 - 808
Target Start/End: Original strand, 34982028 - 34982138
Alignment:
Q  695 gcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccac 794  Q
    ||||||||||  ||||||  |||||| |||||||| || |||||||||||||| |||| ||||||| ||  ||||||||||| ||||| |||| ||| ||    
T  34982028 gcaggcccgaccttgagggagtgcaatgtgctcaatcaagccgggcctccaaaagctatgggcctcaga--aaaaattaaatctaatacccac-ccctac 34982124  T
Q  795 ttaaataaaaaata 808  Q
    ||||||||||||||    
T  34982125 ttaaataaaaaata 34982138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 715 - 759
Target Start/End: Original strand, 27632209 - 27632253
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcct 759  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  27632209 gtgcaaggtgctcaactaggccgggcctccaaatgctacgggcct 27632253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 809 - 860
Target Start/End: Complemental strand, 24701258 - 24701207
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  24701258 gggttaataggcctttaccccctgcaatataggtcacttttggttttccccc 24701207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 715 - 806
Target Start/End: Original strand, 29579655 - 29579746
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||| |||||||| ||||||||||||||||| |||  || ||||||||| | ||||   ||| ||||||||||||||||||    
T  29579655 gtgcaaagtgctcaatcaggccggacctccaaatgctacgggtctcaaacaaaaaattaagtctaatgctcaccccccacttaaataaaaaa 29579746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 806 - 860
Target Start/End: Original strand, 20612963 - 20613017
Alignment:
Q  806 atagggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  20612963 ataggattaataggcctttaccccctgcaatataggtcacttttggttttccccc 20613017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 810 - 860
Target Start/End: Complemental strand, 9136460 - 9136410
Alignment:
Q  810 ggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||||||| |||||| ||||||||||||||||| |||| ||||    
T  9136460 ggttaataggcatttatcccctgtaatatagatcacttttggttttgcccc 9136410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 811 - 863
Target Start/End: Original strand, 47765284 - 47765336
Alignment:
Q  811 gttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    |||||||||| |||| |||||||||||||| ||||||||| ||||||| ||||    
T  47765284 gttaataggcttttatcccctgcaatataggtcacttttggttttccctctgt 47765336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 809 - 860
Target Start/End: Complemental strand, 54354248 - 54354196
Alignment:
Q  809 gggttaataggcatttaccccc-tgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||| ||||||||| |||||||||| ||||||||| |||||||||    
T  54354248 gggttaataggcctttacccccctgcaatataggtcacttttggttttccccc 54354196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 858
Target Start/End: Complemental strand, 12352514 - 12352467
Alignment:
Q  811 gttaataggcatttaccccctgcaatatagatcacttttgattttccc 858  Q
    |||||||||| ||||||||||| ||||||| ||||||||| |||||||    
T  12352514 gttaataggcctttaccccctgtaatataggtcacttttggttttccc 12352467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 808 - 859
Target Start/End: Complemental strand, 13128483 - 13128432
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttcccc 859  Q
    ||||||||||||||||||||| ||  ||||||| ||||||||| ||||||||    
T  13128483 agggttaataggcatttaccctctataatataggtcacttttggttttcccc 13128432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 809 - 860
Target Start/End: Complemental strand, 34027251 - 34027200
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||| ||||||||||| ||||||| ||||||||| |||| ||||    
T  34027251 gggttaataggcctttaccccctgtaatataggtcacttttggttttgcccc 34027200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 766 - 808
Target Start/End: Complemental strand, 45172835 - 45172794
Alignment:
Q  766 aaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  45172835 aaaaattaaatctaatatccac-ccccacttaaataaaaaata 45172794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 707 - 804
Target Start/End: Original strand, 16504 - 16601
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaa 804  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||    
T  16504 ttgagggtgtgcaaggtgctcaaccagaccgggcctccaaatgctacgggcctctaacgaaaaattaaatctaatacccaccccccacttaaataaaa 16601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 3e-32; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 707 - 806
Target Start/End: Complemental strand, 3515116 - 3515017
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||    
T  3515116 ttgagggtgtgcaaggtgctcaaccaagccgggcctacaaatgctacgggcctctaacgaaaaattaaatttaatactcaccccccacttaaataaaaaa 3515017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 6360561 - 6360661
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||||||||||||||    
T  6360561 ttgagggtgtgcaaggtgctcaatcaggccaggcctccaaatgctacgggcctctaacg-aaaattaaatctaatatccaccccccacttaaataaaaaa 6360659  T
Q  807 ta 808  Q
    ||    
T  6360660 ta 6360661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 24455019 - 24455120
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||||||| ||||| |||| ||||||||||||||||||    
T  24455019 ttgagggtgtgcaaggtgctcaaccaggtcgggcctccaaatgctacggacctctaatgaaaaattaaatctaatacccaccccccacttaaataaaaaa 24455118  T
Q  807 ta 808  Q
    ||    
T  24455119 ta 24455120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 707 - 808
Target Start/End: Complemental strand, 31258723 - 31258621
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatcca-ctccccacttaaataaaaa 805  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||| ||| | |||||| ||||||||||    
T  31258723 ttgagggtgtgcaaggtgctcaaccaggccggacctacaaatgctacgggcctctaacgaaaaattaaatctaatacccacccccccacataaataaaaa 31258624  T
Q  806 ata 808  Q
    |||    
T  31258623 ata 31258621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 695 - 808
Target Start/End: Original strand, 2618143 - 2618256
Alignment:
Q  695 gcaggcccgattttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccac 794  Q
    |||| ||||| ||||||  ||||||||||||||||||||| |||| ||||||||| |||||||||||   |||||||||||| ||||| |||| ||||||    
T  2618143 gcagacccgactttgagagtgtgcaaggtgctcaaccaggtcgggtctccaaatgttacgggcctctattgaaaaattaaatctaatacccaccccccac 2618242  T
Q  795 ttaaataaaaaata 808  Q
    ||||||||||||||    
T  2618243 ttaaataaaaaata 2618256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 6754006 - 6754107
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||  ||||||||||| | |||||  ||||||||||||||||||||||    
T  6754006 ttgaggatgtgcaaggtgttcaatcaggtcggacctccaaatgctacgggcctctatcgaaaaattaattctaatactcactccccacttaaataaaaaa 6754105  T
Q  807 ta 808  Q
    ||    
T  6754106 ta 6754107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 707 - 787
Target Start/End: Complemental strand, 12622225 - 12622145
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccac 787  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||    
T  12622225 ttgagggtgtgcaaggtgctcaaccaggccgggcctccaaatgctacggacctctaacaaaaaattaaatctaatatccac 12622145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 718 - 804
Target Start/End: Original strand, 57498 - 57584
Alignment:
Q  718 caaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaa 804  Q
    ||||||||||||||||| ||| |||||||||||||||||||||  || ||||||||| | ||||| |||||||||||||||||||||    
T  57498 caaggtgctcaaccaggtcggacctccaaatgctacgggcctcaaacaaaaaattaagtctaatacccactccccacttaaataaaa 57584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 723 - 807
Target Start/End: Complemental strand, 7525416 - 7525332
Alignment:
Q  723 tgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaat 807  Q
    ||||||||||| | |||||||||||||||||||| |||| |||||||||||||| |||||  ||| |||||||||||||||||||    
T  7525416 tgctcaaccagacggggcctccaaatgctacgggtctctaacgaaaaattaaatctaatactcaccccccacttaaataaaaaat 7525332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 29400940 - 29401040
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaa 806  Q
    |||||| |||||||||||||||| |||  ||||  |||||||||||||||||||| || ||||||||||| ||||| |||| | ||||||||||||||||    
T  29400940 ttgagggtgtgcaaggtgctcaatcagatcgggtttccaaatgctacgggcctctaacaaaaaattaaatataatacccac-ctccacttaaataaaaaa 29401038  T
Q  807 ta 808  Q
    ||    
T  29401039 ta 29401040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 797 - 863
Target Start/End: Complemental strand, 3120403 - 3120337
Alignment:
Q  797 aaataaaaaatagggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||| || ||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||    
T  3120403 aaatagaatatagggttaataggcctttaccccctgcaatataggtcacttttggtttcccccctgt 3120337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 797 - 857
Target Start/End: Complemental strand, 22366287 - 22366227
Alignment:
Q  797 aaataaaaaatagggttaataggcatttaccccctgcaatatagatcacttttgattttcc 857  Q
    |||||||||  ||||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  22366287 aaataaaaagaagggttaataggtctttaccccctgcaatataggtcacttttgattttcc 22366227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 807 - 897
Target Start/End: Original strand, 3119318 - 3119409
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttc-cccctgttaaannnnnnngttagattccgtccttgtaaaaa 897  Q
    |||||||||||| | |||| |||||||||||||||||||||||| ||||| ||||||| |||       || ||||||||||||||||||||    
T  3119318 tagggttaatagacttttatcccctgcaatatagatcacttttggttttctcccctgtgaaatttttttgtcagattccgtccttgtaaaaa 3119409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 808 - 896
Target Start/End: Complemental strand, 18984063 - 18983973
Alignment:
Q  808 agggttaataggcatttaccc-cctgcaatatagatcacttttgattttccccc-tgttaaannnnnnngttagattccgtccttgtaaaa 896  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||| ||| |||       ||||||||||||||||||||||    
T  18984063 agggttaataggcctttaccctcctgcaatataggtcacttttggttttcccccctgtgaaatttttttgttagattccgtccttgtaaaa 18983973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 807 - 860
Target Start/End: Complemental strand, 30409728 - 30409675
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccc 860  Q
    |||||||||||||| |||||| |||||||||||| ||||||||| |||||||||    
T  30409728 tagggttaataggcctttacctcctgcaatataggtcacttttggttttccccc 30409675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 807 - 863
Target Start/End: Original strand, 22365832 - 22365888
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    |||||||||||||| |||||||||  |||||||| ||||||||| ||||||||||||    
T  22365832 tagggttaataggcctttacccccctcaatataggtcacttttggttttccccctgt 22365888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 822 - 896
Target Start/End: Original strand, 30408601 - 30408675
Alignment:
Q  822 tttaccccctgcaatatagatcacttttgattttccccctgttaaannnnnnngttagattccgtccttgtaaaa 896  Q
    ||||||||||||||||||| ||||||||| ||||||||| || |||       || |||||||||||||||||||    
T  30408601 tttaccccctgcaatataggtcacttttggttttcccccggtgaaatttttttgtcagattccgtccttgtaaaa 30408675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 807 - 863
Target Start/End: Complemental strand, 6000730 - 6000674
Alignment:
Q  807 tagggttaataggcatttaccccctgcaatatagatcacttttgattttccccctgt 863  Q
    ||||||||||||   ||||||||||| |||||||| |||||||| ||||||||||||    
T  6000730 tagggttaatagagctttaccccctgtaatatagagcacttttggttttccccctgt 6000674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 809 - 855
Target Start/End: Original strand, 26469007 - 26469053
Alignment:
Q  809 gggttaataggcatttaccccctgcaatatagatcacttttgatttt 855  Q
    ||||||||||||||||||||| || ||||||  ||||||||||||||    
T  26469007 gggttaataggcatttaccccttgtaatatatgtcacttttgatttt 26469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 808 - 861
Target Start/End: Complemental strand, 3063541 - 3063488
Alignment:
Q  808 agggttaataggcatttaccccctgcaatatagatcacttttgattttccccct 861  Q
    ||||||||||||  ||||||||||| ||||||| ||||||||| |||| |||||    
T  3063541 agggttaataggtctttaccccctgtaatataggtcacttttggttttgcccct 3063488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 808 - 860
Target Start/End: Original strand, 18982913 - 18982966
Alignment:
Q  808 agggttaataggcatttacccc-ctgcaatatagatcacttttgattttccccc 860  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||| | |||||||    
T  18982913 agggttaataggcctttacccccctgcaatataggtcacttttggtgttccccc 18982966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 714 - 808
Target Start/End: Complemental strand, 23022 - 22928
Alignment:
Q  714 tgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaaata 808  Q
    |||| |||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||| |||||||||| | ||||||||||||||||||    
T  23022 tgtgtaaggtgctcaaccaggccggacctccaaatgatacgggtctctaacgaaaaattaaatctaatatccaccctccacttaaataaaaaata 22928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 707 - 805
Target Start/End: Complemental strand, 18226 - 18128
Alignment:
Q  707 ttgaggatgtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctctgacgaaaaattaaatttaatatccactccccacttaaataaaaa 805  Q
    |||||| |||| |||||| |||| ||||||||||||||||||| || |||||| | |||||||||||||| |||||  ||| ||||| |||||||||||    
T  18226 ttgagggtgtgaaaggtgttcaatcaggccgggcctccaaatgttatgggcctttaacgaaaaattaaatctaatactcaccccccatttaaataaaaa 18128  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 810 - 896
Target Start/End: Original strand, 14830 - 14918
Alignment:
Q  810 ggttaataggcatttaccccct-gcaatatagatcacttttgattttccccc-tgttaaannnnnnngttagattccgtccttgtaaaa 896  Q
    ||||||||||| ||||||| || ||||||||| ||||||||| ||||||||| ||| |||       ||||||||||||||||||||||    
T  14830 ggttaataggcctttaccctcttgcaatataggtcacttttggttttcccccctgtgaaatttttttgttagattccgtccttgtaaaa 14918  T

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Target: scaffold0100 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 760
Target Start/End: Complemental strand, 46429 - 46384
Alignment:
Q  715 gtgcaaggtgctcaaccaggccgggcctccaaatgctacgggcctc 760  Q
    |||||||||||||||||||||||| ||| ||||||| | |||||||    
T  46429 gtgcaaggtgctcaaccaggccggaccttcaaatgccatgggcctc 46384  T

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