View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4421-Insertion-6 (Length: 50)
Name: NF4421-Insertion-6
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4421-Insertion-6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 35; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 10784334 - 10784376
Alignment:
| Q |
8 |
taaaggtcgcaaaagatattgattctcatcttgtcaaggaata |
50 |
Q |
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| T |
10784334 |
taaaggtcacaaaagatattgattctcatcttgccaaggaata |
10784376 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 10777561 - 10777593
Alignment:
| Q |
18 |
aaaagatattgattctcatcttgtcaaggaata |
50 |
Q |
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| T |
10777561 |
aaaagatattgattctcatcttgtcaaggaata |
10777593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 10772265 - 10772306
Alignment:
| Q |
9 |
aaaggtcgcaaaagatattgattctcatcttgtcaaggaata |
50 |
Q |
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||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
10772265 |
aaaggtcacaaaagatattgatgctcatcttatcaaggaata |
10772306 |
T |
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