View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4421_low_1 (Length: 626)
Name: NF4421_low_1
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4421_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 17 - 616
Target Start/End: Complemental strand, 48631514 - 48630916
Alignment:
| Q |
17 |
aaaatcaatgtggattaagacatttctagtttttgagcaatgaaaatggaatgacctcctagctacattaagtcaatgtccttggatatcgtgagcaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48631514 |
aaaatcaatgtggattaagacatttctagtttttgagcaatgaaaatggaatgacctcctagctacattaagtcaatgtccttggatatcgtgagcaaca |
48631415 |
T |
|
| Q |
117 |
tatattggaaggagtatgtatctagtttatccatattcgtttgattagtgtctcaatgtccacttcagaaggaaatctcagttctcaagtcatgttatat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48631414 |
tatattggaaggagtatgtatctagtttatccatattcgtttgattagtgtctcaatgtccacttcagaaggaaatctcagttctctagtcatgttatat |
48631315 |
T |
|
| Q |
217 |
tttttaaaagataagagacacattttttagagtatgttaatgttttacttaacttattagccgtctggccaaattataaaattgatatctcaaatcaaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48631314 |
tttttaaaagataagagacacattttttagagtatgttaatg-tttacttaacttattagccgtctggccaaattataaaaatgatatctcaaatcaaaa |
48631216 |
T |
|
| Q |
317 |
ggatgaaattttttgttaaaggaaatgtacatttattctagattttcaagtgctgtctttctatagtagtttttaaacaaagtaacgggttctttgaaca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
48631215 |
ggatgaaattttttgttaaaggaaatgtacatttattctagattttcaagtgctgtctttctatagtagtttttaaacaaagtaacgggttctttaaaga |
48631116 |
T |
|
| Q |
417 |
gagagtactcaaatatgcacggtagtaatatcatccaatgagtaaatagtcaaaaaccttcaaaagttgtaaattcttgcgaataccactttcaaattag |
516 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48631115 |
gacagtactcaaatatgcacagtagtaatatcatccaatgagtaaatagtcaaaaaccttcaaaagttgtaaattcttgcgaataccactttcaaattag |
48631016 |
T |
|
| Q |
517 |
agnnnnnnncaaaattatcttcaaaattgttaaacgtctatcagtttgccccttccgtcaatttacttatttggtcaacataacgtgacaaatgtctgtg |
616 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
48631015 |
agaaaaaaacaaaattatctccaaaattgttaaacgtctatcagtttgccccttccgtcaatttactcatttggtcaacatgacgtgacaaatgtctgtg |
48630916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University