View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4421_low_10 (Length: 295)
Name: NF4421_low_10
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4421_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 33 - 281
Target Start/End: Complemental strand, 38185735 - 38185486
Alignment:
| Q |
33 |
aataaatttacaccattagacatcagagaaaagttaaaaactctttcttttaaatattttctacaacacacggtcttttattgtatcaaactcacgtgga |
132 |
Q |
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| T |
38185735 |
aataaatttacaccattagacattagagaaatgttaaaaactctttcttttaaatattttctacaacacacggtcttttattgtatcaaactcacgtgga |
38185636 |
T |
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| Q |
133 |
tttcatcatttcatatgtgatctatttcaaacacgtgggacacatttgagtttccataaaataatgggcgttagaaaaaataatgttaaaaagataatat |
232 |
Q |
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| T |
38185635 |
tttcatcatttcatatgtgatctatttcaaaaacgtgggacacatttgagtttccataaaataatgggcgttaaaaaaaataatgttaaaaaaataatat |
38185536 |
T |
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| Q |
233 |
ccaaatcacttctataccaccaattatacat-agtaccacatagagtttg |
281 |
Q |
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| T |
38185535 |
ccaaatcacttctataccaccaattatacatgagtatcacatagagtttg |
38185486 |
T |
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