View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4421_low_2 (Length: 541)
Name: NF4421_low_2
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4421_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 262 - 525
Target Start/End: Original strand, 45851642 - 45851905
Alignment:
| Q |
262 |
tatacattatgaagcttccaaagtggagcaattcaacaagccacattgttttgacatagatgatttaattatgtgatttgattacttaacgataaagtat |
361 |
Q |
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| T |
45851642 |
tatacattatgaagcttccaaagtggagcaattcaacaagccacattgttttgacatagatgatttaattatgtgatttgattacttaacgataaagtat |
45851741 |
T |
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| Q |
362 |
acagtaattacaaatccaaaaccagttgtgtcttgtcaccaaacttaaatgattttggcttataacttaattatttcttgttgacaaaatgattttggct |
461 |
Q |
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| T |
45851742 |
acagtaattacaaatccaaaaccagttgtgtcttgtcactaaacttaaatgattttggcttataacttaattatttcttgttgacaaaatgattttggct |
45851841 |
T |
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| Q |
462 |
taattataaattgattgagattgagaatatatatttccaattaaattcgttaagatgtcttttt |
525 |
Q |
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| T |
45851842 |
taattataaattgattgagattgagaatatatattttcaattaaattcgttaagatgtcttttt |
45851905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 33081556 - 33081805
Alignment:
| Q |
12 |
atcatcataatagtaataaatgaaaataagaatatggaagaaactaacttcgccggcactttcgagttcatcatcagagcaaccggcccaaaggggatga |
111 |
Q |
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| T |
33081556 |
atcatcataacagtaataaatgaaaataagaatatggaagaaactaacttcgccggcactttcgagttcatcatcagagcaaccggcccaaaggggatga |
33081655 |
T |
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| Q |
112 |
gctttgaaagcagcttccatattagcaagaaagtcttgtacggcatcactgtctctctcaggatcgggtccatgatttgaaaatgaaactatgaaactgt |
211 |
Q |
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| T |
33081656 |
gctttgaaagcagcttccatattagcaagaaagtcttgtacggcatcactgtctctctcaggatcgggtccatgatttgaaaacgaaactatgaaactgt |
33081755 |
T |
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| Q |
212 |
aaaattataattattgcaatgcatcagtgaattgattagggttcggattg |
261 |
Q |
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| T |
33081756 |
aaaatcataattattgctatgcatcagtgaattgattagggttcggattg |
33081805 |
T |
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